LOC120560136 (rbm19)


Basic Information

Item Value
gene id LOC120560136
gene name rbm19
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18497963 ~ 18504897 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802322.1
acatGTCGAGACTCATTGTTAAAAACCTCCCTAATGGGATGAAGGAGGAGAGGTTCAGGTCGATGTTTGCTGCCTTTGGCACCGTTACAGACTGCTCTCTCAAGTTTACCAAGGATGGCAAGTTCCGCAAGTTCGGCTTTGTGGGTTTTAAAATGGAGGAAGATACAAACCAAGCCCTGAAACATTTCAACAAGAGCTTCGTGGACACATCCAGAATGACGGTGGAGATGTGTAAGGCCTTTGGAGACCCCACTAAGGCAAAAGCCTGGAGCAAACATACCCAGAGCTCAGGCCCGGACAAACCTTCCACTCCTGCTGACACTGACAGCAAAAAGaaaaagaaacagaaaaaggaaACAGACAGCACACTTGGAAATCTGGAAGAGGACCAGGGATTCAAGGAGTTTCTGTCAGTACATCAGAATCGGAGCCAAGCACCGACCTGGGCGAATGATACTGTGCAGCAAACAACTGATCCTGACAGTGGACAGGCAAAGGCTCAGGGCAAGAAGAACCTTGCTTCAGATGACTACCTCAACTTTGATTCAGACCAGTCAGAGGATgaggaagatgaagatgaagGTGCCACTAAAGAAGCACTGAAGTCTGGCTTATCAGATATGGAGTACCTGCGCTCTAAGGTGGCACAGACAGACGACACCATGGAGGAGAGTGTAGAGAAGGATGATGGAGAAGGGGGTGATGATGAAGACGAGGGTGATGATGAAGACGAAGTTTGTGGTCCTCGTGCAGCACACCGAGACGCATATGAGAGTGGTGACAGAGAAAACCTGTCAAAGACCAATACCTCAGTTGCCTCTGAGGATAAGAAGCAGAGCAAAGCGAAGAAAGCTACCAAACAAGTGATGGAGCCGACGACAGAGTTCACAGTGAAGCTGAGAGGAGCCCCTTTCAGTGTGAAAGAGCAACAAATCCGAGAGTTCATGACGCCGCTGAAGCCTGCAGCAATCAGGATTGGGAAGAATGAGAGTGGAGATAGAACAGgttATGTATATGTGGATTTGCACTCTGATGAAGAGGTGGAAAAGGCCTTGAAGAAGAATAAAGACTACATAGGTGGGCGTTACATTGAGGTCTTCCGTGTGGATGCCTCTGGGGGTAAGggcaagagagacagaaaggacaAAGAAATTGACAGAAACTTCACCAGGAAGCtgaaggaggatgaggaggaggaagatgttGCAGAGTCAGGTCGACTCTTCATCAGGAACCTCCCTTACACCTGCACCGAGGAGGAGATCAAAGAGCTATTTGCTAAACACgGTCCTTTGTCTGAGATGCTCTTCCCTATTGACAATCTAACCAAGAAGCCGAAAGGATTCGCTTTCGTAACCTACATGATACCAGAGAATGCTGTGACAGCTCTGGCCCAGCTGGACGGACATATATTTCAGGGCAGGATGCTTCACCTGCTTCCCTCCAcattgaagaaagaaaaaaatgactcTGCAGATGCTGGTGGTCCTGGCTCTTCGTCTTACAAGCGGCAAAAAGATGCCAAAAATAAAGCTTCAAGTTCCAGCTCCCACAACTGGAACACCCTGTTTCTGGGCACAAGTGCAGTGGCAGATGCCATTGCTGAAAAATACAACACCACAAAAAGCAAAGTCCTGGACCACGAGTCAAAGGGAAGTCTTGCAGTGAGGATGGCCCTGGGAGAGACACAGATTGTTCAGGAGACTCGGCAGTTTCTACTAGACAATGGTGTCAGTCTGGATTCCTTTAGTCAGGCTGCAGCAGCGAGGAGTACAACTGTCGTCCTGGTGAAAAACCTTCCAGCTGAAGTGACGGCATCAGAGTTAGAGGAGCTTTTCTCACCTCATGGCTCTTTGGGCCGAGTACTGCTGCCGCCCTCAGGCCTCACCGCCATTATCGAGTTCCTAGAGCCAACGGAGGCGAAACGAGCATTCACTCGGCTGGCCTACAGCAAGttccaccacatcccactGTATTTGGAGTGGGCAcctgtgggggtgtttgtggcaGCCAAACCAGAACCAGTTTTAGAAAAAGATGAGGCaatgaaagaggagaagaaagatgaagaagaagaagaggaggaggaggaggaggaatctGCTCCTGGTTCAACACTTTTcattaaaaatctaaatttcaGCACGACCGAGGAGAAACTACAGGAGACATTCTCCAAATGTGGCAAGATCACGTCCTGCACCATCTCCAAGAAGAAAGATAAAACAGGCATGATGTTGTCCATGGGCTACGGTTTTGTTCAGTATCAGACAGCAGAGGCTGCGCAGAAAGCCCTGAGGCAACTACAGCACTGTACTGTGGATGAACACCAGCTAGAGCTGAAGATTTCTGAGCGAGCCACAAGGACTACTGAGGTTTCACGCAAGAAGAGGCAAGACGAGAAGAAACAGACAGGATCCAAGATCCTTGTGCGGAACGTCCCCTTCCAGGCCACTGTCAGAGAAATTAGGGAACTCTTCTGTACGTTTGGAGAGCTGAAGACAGTCCGTCTTCCAAAGAAAGCAGCTGGTTCAGGGAACCATAGAGGTTTTGGCTTTATTGACTTCCTCACCAAACAGGACGCTAAGAAAGCATTTACTGCATTGTGCCACAGCACCCATCTGTACGGAAGACGCCTTGTGCTGGAGTGGGCTGATGCTGAGGAAACGGTAGAGACATTGAGACGGAAAACAGCCGAACATTTTCATGTGGCCACCAAAAAGAAGCGAAAAACAGAAGTTATGGAGGGAATTCTGGAGACAATGGAAactggagggggaggggaggggaagaCTGAGTTCCCTGAACGCTGTTGTCTCTATTGAAGCCTCTACACAACTCTGACCagtttgcatgtgtttttggGAACAAAATAAGGACCTGAGTGGCATGTGCAGAAGGAGCAATTGAATTGATGAAATTAACAGCTGGTCGAAGTTTTGGAGGTTTAAAAACCTCTGGATTTCTTACATTACACATGTTTTGTACAGAATTATGCCTCAAAGCAATATGATTTGACTGTCAGTTTTTATATAAAGTTTTATTTCATGCCTCa

Function

symbol description
rbm19 Predicted to enable RNA binding activity. Acts upstream of or within digestive tract morphogenesis. Predicted to be active in nuclear speck and nucleolus. Is expressed in brain and digestive system. Orthologous to human RBM19 (RNA binding motif protein 19).

NR:

description
PREDICTED: probable RNA-binding protein 19 isoform X1

GO: NA

KEGG:

id description
K14787 MRD1, RBM19; multiple RNA-binding domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802322.1 True 3055 mRNA 0.48 27 18497963 18504897

Neighbor

gene id symbol gene type direction distance location
plbd2 plbd2 coding downstream 102 18492742 ~ 18497861 (-)
morc2 morc2 coding downstream 10583 18470155 ~ 18487380 (-)
LOC120560133 LOC103357459,LOC104947821 coding downstream 28267 18463203 ~ 18469696 (-)
slc8b1 slc8b1 coding downstream 35634 18455227 ~ 18462329 (-)
si:ch211-166a6.5 LOC104947816 coding downstream 153440 18333094 ~ 18344523 (-)
LOC120560137 aifm3 coding upstream 7612 18512509 ~ 18609942 (-)
LOC120560142 NA coding upstream 31534 18536431 ~ 18558021 (-)
LOC120560138 LOC100710522,LOC103357464,LOC102301779,LOC101474823,LOC102203382,LOC106521717 coding upstream 44450 18549347 ~ 18554564 (-)
LOC120560140 LOC103357464,LOC100710522,LOC102203382,LOC101474823,LOC102301779 coding upstream 59292 18564189 ~ 18572337 (-)
cldn26 LOC103357467,LOC104947832 coding upstream 105808 18610705 ~ 18611694 (-)
G62586 plekha2 non-coding downstream 100017 18394836 ~ 18397946 (-)
G62571 NA non-coding downstream 140210 18355242 ~ 18357753 (-)
G62568 NA non-coding downstream 165567 18331384 ~ 18332396 (-)
G62567 NA non-coding downstream 168071 18329603 ~ 18329892 (-)
G62493 NA non-coding downstream 193607 18304157 ~ 18304356 (-)
G62629 NA non-coding upstream 16667 18521564 ~ 18521875 (-)
G62630 NA non-coding upstream 30036 18534933 ~ 18535281 (-)
G62625 NA non-coding upstream 34229 18539126 ~ 18540015 (-)
G62733 NA non-coding upstream 242296 18747193 ~ 18748609 (-)
G62771 NA non-coding upstream 332077 18836974 ~ 18845777 (-)
zgc:158398 NA other downstream 5556 18488162 ~ 18492407 (-)
iqcd NA other downstream 54945 18437676 ~ 18443018 (-)
G62582 LOC106098714,LOC103357453,LOC102788116 other downstream 111694 18383005 ~ 18386269 (-)
G62580 tacc1,LOC101470878,LOC102206806 other downstream 117461 18377602 ~ 18380502 (-)
fancg fancg other downstream 194101 18297593 ~ 18303862 (-)
G62626 LOC103357464 other upstream 5258 18510155 ~ 18512261 (-)
mmab mmab other upstream 230011 18734908 ~ 18737406 (-)
ficd ficd other upstream 595347 19100244 ~ 19102474 (-)
si:ch211-225b11.1 LOC103353539,LOC101465611,LOC100705171 other upstream 674608 19179505 ~ 19237086 (-)
LOC120560442 LOC104920315,LOC103374896,LOC100704901 other upstream 1044554 19549451 ~ 19554908 (-)

Expression


Co-expression Network