LOC120560490 (abcb9)


Basic Information

Item Value
gene id LOC120560490
gene name abcb9
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8972286 ~ 8989363 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803062.1
CACGTTTGGCAGTTTGCATGGGTTCTCAGGGAGaggcagcttgctcacttttaAATCACTCATCAACCAGGTACTTAAATAGACTCAATTAACATACACTTTACACAGACTACAATTAGGCTACAGACTCACCGAGTTAACATTGGGAATTCCAAATAAGGATAAGTGGCAAATGAgtctataatttttttaaatacaagaaCACTCGGGTCTGGTTTGATTATGTGAACGTATGTGAACATGGTGAGGGTGAGGGCGAGGGGGGTATCTCTTTTTCTTAATGTCATTTCGTGTCTGACAGGTCTTTAGGGTCTAGACCTCTGTGCTTTATAGACGATCTTTGTTACCGGTGTCTACTTAACACAAGGTCGGTTCATGGTTCACTCTCACAAAcctaacgtgactcaggttgagaCGTAGATGCTGTCTCTTAACGTGCCGTGTACCGTATTTACGCGGCTGTGTATTTTATTATGAACGGAGAGAGACTACAGTAAATAAGTGAATTCCTGGGCGGACATTAAGGGATTTACTAACATGGACGGACGCGTTTGAAACCTGACGCAATACCGCTCACCGCCTGCTACCAGCTAACTTACATTGCTAGTTAATTCTACTGTGAACCATTTGTTAGACTGATATTGCAACCTTACTGGACAACCGTTTTACTGCGTTGTGAGAGCTTAAATTGTAACTTGTTATTGGTTATTGTAGAGCTACCTCACATTGCCCCGCTGTAGCTACGAGCCACAGAGGACCGGAAGTACttcccttcaaaataaaagtaggtGTAAAGAAATAACTAAAGTCATTTCTGTATCTTCTGAGTTAATGTTGTGTGTATCACTATGTGTCCACTTGTGAGTGGctagatactttttttttttttgttattacccAGTTTAACACTCATAGTGCTTATGATAACTTCCTGAATAACTATCCTGATAAGCAGCATGGGCATCAGAGTAGCTGTGAGCTGCACTGTGTTGTATACCCTACTGGATGTGGTTGTCACCACTGTCATATACACACACGGATCACACTTGAGCATATTCAAAAAGGATGCCCTGAACTTTAACATCCTCCAGTCAGCATTGGACCTCTGGGGGACTGTGCTGCTCAGAGCCTCCCTCCTGCTAGGTGCCTCCATAGGGGTGTCATGGAATAGAAAAGACGGCCCACCGAGGGTCGCAAAACTCACCACCCTCATTGTCCTCCTCTGCCTGATCGTCGCCACCTACGCCCTGGCCAAGATGCTGATGCTGAGCGAGCTGGGGCCTCTGAGCCACCAGCCCTGGATCCTGAGCCTGATATGTTGGACATGTGCCTCATCTCTGGGTGTCCTCCTGCTCTGGAGACTGCTGGGGAAGGAGTCCAACTCGGCCAGCAGTcactacaacagcagcagcagcagcagtggaggAGAACGGGGCTCCCAGGACACTGACAAGCTGGTGGAGACAGCTGGTGAGGAGGAGCAAGAGGTGGGGtgtgagaggaggaagaaggagaaaaaggaggaggaggagggaagccaggagaaggagaagaccAGCTCTGGGGCTACACTGGGACGTCTGCTGCTCTACTGCAGAAAGGATGGTGGGCTGCTGTCTGTAGCCGTCCTCtttctcatcatctcagctgtgtGTGAGGCCTTCATACCGTACTACTATGGGAAAGCAATTGATAGCATTGTGGTTGACCAGAGCATGGAGCACTTCGCTAAGCCTGTGATCACGCTGTCAGTGCTGGCGGTTGCCAGTTTCCGTGTGGCCCTGGTCATCAATAACAGACCCCACCCCAAGGGGCCCCACCATATCACCCCCCCCAGGACACCCCAACCCAGGTGggcgccccccccccaaccttcagcacacccccccccctgcaCCACCACCCCAACACTAACCTCCACCACCCTCCCCTGGGGGACGCCCAGCCAGCACCCTGAATGGTGCCTTCAGGGCTTCCTCTCCGGTGTGCCCTCACCGGAACACCACAGCGACAACTACAAGGAAATGTGGatCTCAGAGCTTGCTTTAGAGGTTGCTATCCTCTACTATGGCGGCCACCTTGTAATAACCGGTCAGATGAGTAGTGGTTCCTTGATATCTTTTTTCATATACATGCTCGAACTGGGAGAATGTCTTCAGAATATTGCATCGGTGTACACGGGCCTCATGCAGGGAGTTGGAGCTGCTGAGAAGGTTTTCGAGTACCTGGACAGGGAACCCAAACACCCAGCTGATGGCACAGAGGCTCCAGACACATGCACCGGTGTGGTGGAATTTAAAGACATCAAGTTTGCCTATCCAACACGCCCTGAGACTGAAATTCTCAAGGGAGTGTCATTCACTTTGCGGCCTGGGGAGGTGACCGCCCTCGTGGGTCCTTCAGGCAGTGGAAAGAGCTCCTGCGTGAGTCTGCTGGAAAACTTCTACCTTCCTCAGCAAGGCCAAGTGCTGCTGGATGGAAAGCCCATTCACACCTTCCAGCACGACTACCTCCACTCCAAGGTAGCTCTTGTTGGCCAAGAGCCTGTGCTGTTTGCGCGGACGGTCGAGGAGAACATCACCTATGGCCTGACTGACGTCCCAATGGAGACTGTGGTGCAGGCTGCCATCGAGGCGAATGCTCACGATTTTATCACCTCCCTCTCTACAGGCTATGGAACAAATGTTGGAGAGAAAGGCACCCAGTTGTCAGGGGGGCAGAAACAAAGGGTGGCCATTGCAAGAGCTCTCATCCGCAACCCTCGTGTTCTTATCCTGGACGAGGCGACCAGCGCCCTAGATGCAGAGAGTGAACACATTGTTCAGAAGGCTCTAAACAACATCATGCAGGAGCGCACGGTGTTGGTGATCGCCCATCGGCTCAGCACTGTGGAGAAGGCAGACAACATCATTGTGATTGACAGGGGCCATGTGGCTGAACAGGGGTCTCACAGTCAGCTGATCGCCAGTGGGGGGCTATACTACAAGCTGGTGCAGAGGCAAGTCCTGGGCATCGAGACAGGGGCAGAGGTCCTCAACAAACCCGAAAAACTCAGCTGGAAGTCTGATGGTGGAAGGCAGAGGAGAAGGCAAAGCAGCAGTGGCAGTGGCAGTGAGTCTGAACACAATTTGCGCTACTGAGAATGAACTGCAGGGTGTGGTAATGGGATTGGACTGTTGGAAGGGTTGATTATTTCTGGATATTCTGGGATTCAAACCATATGTACTGTAGAAACTATTTGTGCAGAAATTCAGAAGTGTAAAGTTCCCTCACTGAAATCCAGGAGCGTGatatattttattgtaatttgATCATGTCAGAATCCGGTCAGGTTGAGATCCACTCATAGACAAACTGAGAGGTACTATGAAGTAAAAAATATAGTTGAATATCTTAAAACATATCATAgagcagtgattcccaaccaggggtactTGTACCCA

Function

symbol description
abcb9 Predicted to enable ABC-type peptide antigen transporter activity and TAP1 binding activity. Predicted to contribute to MHC class I protein binding activity. Predicted to be involved in antigen processing and presentation of endogenous peptide antigen via MHC class I; peptide transport; and transmembrane transport. Predicted to be located in lysosomal membrane. Predicted to be part of MHC class I peptide loading complex. Predicted to be integral component of membrane. Orthologous to human ABCB9 (ATP binding cassette subfamily B member 9).

NR:

description
PREDICTED: ATP-binding cassette sub-family B member 9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803062.1 True 3443 mRNA 0.50 10 8972286 8989363

Neighbor

gene id symbol gene type direction distance location
LOC120560802 abcb9,LOC106965289 coding upstream 7180 8939829 ~ 8965106 (+)
zgc:113436 LOC102776507 coding upstream 39033 8922283 ~ 8933253 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding upstream 64562 8861970 ~ 8907724 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding upstream 135313 8810554 ~ 8836973 (+)
LOC120560486 LOC107690107 coding upstream 490108 8465171 ~ 8482178 (+)
tcima LOC104938922,LOC102777577,LOC103152810,LOC103353800,LOC101487124,LOC102217691 coding downstream 144184 9133547 ~ 9134580 (+)
LOC120560494 NA coding downstream 378836 9368199 ~ 9375746 (+)
marveld2b LOC104926564,LOC103371582,LOC102788930,LOC102293847,LOC101466532 coding downstream 2183656 11173019 ~ 11188211 (+)
oclnb LOC104926565,LOC103397562 coding downstream 2204124 11193487 ~ 11206112 (+)
gtf2h2 LOC100696048,LOC102788170,LOC101466805,LOC102292669,LOC102204724 coding downstream 2229588 11218951 ~ 11231887 (+)
G60232 NA non-coding upstream 42458 8854273 ~ 8929828 (+)
G60229 NA non-coding upstream 115856 8833627 ~ 8856430 (+)
G60223 NA non-coding upstream 187366 8784653 ~ 8784920 (+)
G60201 NA non-coding upstream 240364 8731713 ~ 8731922 (+)
G60189 NA non-coding upstream 324837 8647221 ~ 8647449 (+)
G60273 NA non-coding downstream 455 8989818 ~ 8991004 (+)
trnaq-cug_4 NA non-coding downstream 223879 9213242 ~ 9213313 (+)
G60363 NA non-coding downstream 293449 9282812 ~ 9283636 (+)
G60378 NA non-coding downstream 474565 9463928 ~ 9464187 (+)
G60387 NA non-coding downstream 501647 9491010 ~ 9491626 (+)
LOC120560007 NA other upstream 537614 8431537 ~ 8434672 (+)
LOC120560006 NA other upstream 544541 8423189 ~ 8427745 (+)
cux2b cux2,LOC102795992 other upstream 920946 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 1093915 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 1342106 7625736 ~ 7630180 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 2078 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 28528 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 937587 9926950 ~ 9981054 (+)
LOC120561142 NA other downstream 1737075 10726438 ~ 10746953 (+)
LOC120561144 NA other downstream 1758753 10748116 ~ 10752440 (+)

Expression


Co-expression Network