snrnp27 (snrnp27,LOC102787093)


Basic Information

Item Value
gene id snrnp27
gene name snrnp27,LOC102787093
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6997153 ~ 7007259 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803119.1
AAGCTCGCATGTAAAAGACAACAGGATAGCCTGCCTTGAAGTTGCAGCCATTACtctaaagaaatacaaacaacacagtTTGTTCATAGTTCTCCCCTCAAATTGAGTTCTATTTAGTATTACATTGACCTAAGAGGGTGACATTTGATTAATTTGGGAGAATGGGCAGGAGCAGGAGTCGAACTCCTCCGAGACGAGAGCGAAGGCGTTCCCGCTCAACTTCAAGGGAGCGCGAGCGAAGGCGGAGGGAAAAGGAACGCACTCGTTCTCGGGATCGGGACCGCGAGCGGCGGAGGAGTCGCTCACGATCTCCTCACAGGAGACGTTCAAGGTCTCCACCCCGACgtcatccctcctcctccacctccccctCTGATGAGGGCAAAGACGCGAAGGACAAGTCAGCAAAGCCCATTCAGATCTCGGAGGAAGACATGGAGGGCAAAACAGAAGAGGAAATTGAGATGATGAAACAGATGGGATTTGGTTCCTTTTCCACCAGCAAGGGGAGGAAAACTGATGGATCGGTCAATGCCTTTGCTATCAATGTGACCATGAAGAGAAAATACAGgCAGTACATGAACAGAAAAGGTGGATTCAACAGACCACTGGACTTCATCGCATGAAAGTATCAACATCTCATTGTGATACCTGAGAAGCTTACCTCCGTTCTCCCCGTAAAGTAGAGGATGATATAGTGCTATTTCTTATTATTTCAAACCTGTTTTATGTTATGCAACAATTctgtatatacttttttttgggggggggagggggtcgTCTCCTATCAACTGTGTCTGAATATTGATGGGAGACACAATGCATTGAGCTTTGTGTTGTTGAAGTGTGTAGGGTTGTATTTGAAATAAAggcattttaaaaatg

Function

symbol description
snrnp27 Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27).

NR:

description
U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein

GO: NA

KEGG:

id description
K12846 SNRNP27; U4/U6.U5 tri-snRNP-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803119.1 True 885 mRNA 0.46 6 6997153 7007259

Neighbor

gene id symbol gene type direction distance location
figla figla coding upstream 29057 6951936 ~ 6968096 (+)
npffr1l2 LOC104924995 coding upstream 142749 6829697 ~ 6854404 (+)
tet3 LOC104925995,LOC103369109 coding upstream 200456 6752288 ~ 6796697 (+)
ap3m2 ap3m2,LOC102227009,LOC100708439 coding upstream 258844 6727779 ~ 6738309 (+)
cdca2 NA coding upstream 348175 6631591 ~ 6648978 (+)
mxd1 mxd1,LOC106535940,LOC102787379 coding downstream 905 7008164 ~ 7026887 (+)
cds2 LOC104924982,LOC103361071,LOC106535345,LOC107098564,LOC105938002 coding downstream 68067 7075326 ~ 7101894 (+)
arhgap25 arhgap25 coding downstream 101554 7108813 ~ 7136851 (+)
bmp10 bmp10,LOC101468345 coding downstream 132938 7140197 ~ 7143020 (+)
rchy1 rchy1 coding downstream 504780 7512039 ~ 7519772 (+)
G59627 NA non-coding upstream 181647 6815248 ~ 6815506 (+)
G59543 NA non-coding upstream 255864 6741041 ~ 6741289 (+)
G59544 NA non-coding upstream 256225 6740664 ~ 6740928 (+)
G59516 NA non-coding upstream 662362 6334494 ~ 6334791 (+)
G59515 NA non-coding upstream 662939 6333979 ~ 6334214 (+)
G59687 NA non-coding downstream 20039 7027298 ~ 7029309 (+)
G59694 NA non-coding downstream 74755 7082014 ~ 7106854 (+)
G59696 NA non-coding downstream 172234 7179493 ~ 7263343 (+)
G59803 NA non-coding downstream 486629 7493888 ~ 7494204 (+)
G59804 tia1,LOC104967008 non-coding downstream 491230 7498489 ~ 7504014 (+)
add2 LOC102210956,LOC102786375 other upstream 297 6969119 ~ 6996856 (+)
kat6a kat6a,LOC102311194,LOC106937639,LOC106932925 other upstream 278269 6674864 ~ 6718884 (+)
G59347 NA other upstream 1499399 5495155 ~ 5497754 (+)
golga3 golga3,LOC102797501 other upstream 1527943 5448061 ~ 5469210 (+)
fbrsl1 LOC103357558 other upstream 1626285 5053233 ~ 5370868 (+)
zgc:65851 LOC103361079,LOC101467048,LOC102210174 other downstream 2387 7009646 ~ 7050772 (+)
LOC120560567 ier3ip1,yee9,LOC103361062,LOC100710589,LOC107393509,LOC105014506,LOC103152384 other downstream 567466 7574725 ~ 7576136 (+)
susd1 susd1 other downstream 592833 7600092 ~ 7623715 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other downstream 618477 7625736 ~ 7630180 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other downstream 840412 7847671 ~ 7878371 (+)

Expression


Co-expression Network