lrrc2 (LOC102210414)


Basic Information

Item Value
gene id lrrc2
gene name LOC102210414
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15242850 ~ 15252339 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803702.1
cacacacacacacacacacacacacacacacaccgtcagATCTCAGTAAACAAGCTGGTGAAAGTGAGCAGACAGCAGGACGTTAGCAGGAACTCACAGGAGCAGAGATGGGTCCTGTGAGGAAGCTGGACGTCCCGGTGAGCGACCTCTCTCTGATCAGAGGGATCTGGGAGGTCCGAGTGAAGAAATACAGACATAAACAAAagaaggagcaggagaggaTTGAGATGAGCGCATTGCCCAAgatCGACCAGCAGTGGCAGTATCGTATCTACTGTAAGGCACTGAAGACCAAGGAACTCAACCAGCTGCATCATTACCTAGAGAGATCTACACTGACTGATATACAGCCCTGCACAGAAGCAGAGCAGCAGGATCAGAAAGGGTTAGATCCGGAGCAGAAGCTGATCTTCCAGCTGGAAGGAGATCAGTGGATGGACTTCCCCAAGGACTTGCAGTGGATGACGTACCTGAAAGAGTGGCAAGTCAGTGGGACAAAGATCAGTCGGCTGCCTGAGTACCTGGCTCTGTTCACCCAGCTCACGGTGCTCGAGATCCCCAAAAATGCCATCGCCGAGCTGCCACCTGAGATCGGAAAACTGACATGTTTGAGGAAATTAAATGCCAGCTACAACCGTCTGTCCAAAGTTCCTCCAGAACTCGGAAACTGTGAGAACCTGGAGAGACTCGAACTCACAGGAAACCATAACCTGTCCCAACTGCCGTTTGAGCTGAGCAGCCTAAAGAAGATGGCTCACCTGGACATCGCGGAAAACAGGTTCACATCGATCCCCATCTGTGCTCTGAGGATGAGCCGCCTGCAGCTGCTGGACCTGAGCAACAACAGTCTGACTGACCTGCCGCAGGACATGGACAGgttggAGCAGCTGGTCACCCTGTTCGTCCATAAGAACAACCTGACTTACCTCCCTCACTGTCTCAGCAACATCTCCACACTCAAGATGATTGTCGTCAGCGGTGATGAGCTCACCAGCATCCCGACTAAATTGTGCAGAAACCCCGAAATCAAGTTTATCCGACTGCGAGACAACCGTGCGAGcgcagaaaagaagaagaaagaagagaagaagaagaaagacagGTGGAGagtgcagagagaagaggaggtgaagaaggacagcagagagaaggagtTCATCGAGGTTTACATCAGCTCGCTGAAGGACAGAGACACAGTCCCTGAATCCACCACCAAGGTCTCCATCTCCTGCCTGctgtgaggaagaggaggaagataaAGCTGACGTCTGTCATCACGTGAGAGACTGAAAGATAATTTGAAGCAGCATTTTCAAAGCAGCGCTAGAAAAGATACAAAATCACAATAAAACTGTTTCATTCATGGGATACCAGACTCTCATCTATAAAAGGCAGCGCATTGCATTACGGGATTGTTAGCAGAAAGTAATGTTGGCCTACATGCTGTCGACAAAAGCTTAACACTGTGAAGTTCATTCCTgccaaggggaaaaaaatgtaaatgataaaaaatctaaataatcaaatttaatttcaaaatgatccctttgaacactatTTAATATAGTTTAATATTTAtcctggacaactcgctgtaggGATGCATgtatggtgatgcccaaatatgtaattttgctttgggttggtattgtaacaCTAATGGCTGATGTCACATgcctgttgttcaataaaagattagatttattccagttaattttatagCTGGAGATTCAGCCAAATTCGTTGAAgatcttaagaatttttggaatagagtcctcaagatcagagatgtacaacaaaatatcatctgcaaataacaATATTGAGCTGTTACTAAGTCTACCTTCTGACAAGTCAACACTGACATTTTAACTCTTAAATACTCAATATATTAAAAAgtaaattgaaataaaataaaattacttCCTTAAATTAAATTATGATTATGCCACATTATCATACATTTGACAAGTTTTTACTATTTTAGAAGTTTGACTTTGGATTTaaattgttttgtcatttttaacatttcatCTATTCCCCGCCCCCCCTTGTCAGTAATGAACTTCCATAGTTTTCTACAatctggtttatttgcatgtatcCCTGCTATCAGATACTTTTTAAATTTGATGTTTGAGTGCTTTTAAATTAATTTCTGCATTtcaaaaaaaaccttttcattCCAAAATCAGATTTCCAACATTTAAACAGTTTGACGTCAACTCATTGAAGTTCACTGCTTCATTATAAACCGTGATCACAAACAtaatttacaatttaatgttttgaacGGTTAATCTTGGAGTACcacactgtacagtatatctgtcTGTGCAGCGAATGTGaggattttgttttaatgttttgttttctccacacaaacacattggaGACATATCTGGGAGAAACTGGATTTTATGGTTGAAGGTGTAAATGTGACCAAACAGAAACGAGGCTGAACGTCAGAAAAATTAAAGATAGATTCATTTCTGCAACAAAATGTGTAAGTGCAAATTACAAACACATTTAGTGATTATTCCCaagtgttttaacttttatatttttattagttgTGTAACTGATTTTTCTGTGTGACGCTTTGAGAAGT
>XM_039803703.1
cacacacacacacacacacacacacacacacaccgtcagATCTCAGTAAACAAGCTGGTGAAAGTGAGCAGACAGCAGGACGTTAGCAGGAACTCACAGGAGCAGAGATGGGTCCTGTGAGGAAGCTGGACGTCCCGGTGAGCGACCTCTCTCTGATCAGAGGGATCTGGGAGGTCCGAGTGAAGAAATACAGACATAAACAAAagaaggagcaggagaggaTTGAGATGAGCGCATTGCCCAAgatCGACCAGCAGTGGCAGTATCGTATCTACTGTAAGGCACTGAAGACCAAGGAACTCAACCAGCTGCATCATTACCTAGAGAGATCTACACTGACTGATATACAGCCCTGCACAGCAGAGCAGCAGGATCAGAAAGGGTTAGATCCGGAGCAGAAGCTGATCTTCCAGCTGGAAGGAGATCAGTGGATGGACTTCCCCAAGGACTTGCAGTGGATGACGTACCTGAAAGAGTGGCAAGTCAGTGGGACAAAGATCAGTCGGCTGCCTGAGTACCTGGCTCTGTTCACCCAGCTCACGGTGCTCGAGATCCCCAAAAATGCCATCGCCGAGCTGCCACCTGAGATCGGAAAACTGACATGTTTGAGGAAATTAAATGCCAGCTACAACCGTCTGTCCAAAGTTCCTCCAGAACTCGGAAACTGTGAGAACCTGGAGAGACTCGAACTCACAGGAAACCATAACCTGTCCCAACTGCCGTTTGAGCTGAGCAGCCTAAAGAAGATGGCTCACCTGGACATCGCGGAAAACAGGTTCACATCGATCCCCATCTGTGCTCTGAGGATGAGCCGCCTGCAGCTGCTGGACCTGAGCAACAACAGTCTGACTGACCTGCCGCAGGACATGGACAGgttggAGCAGCTGGTCACCCTGTTCGTCCATAAGAACAACCTGACTTACCTCCCTCACTGTCTCAGCAACATCTCCACACTCAAGATGATTGTCGTCAGCGGTGATGAGCTCACCAGCATCCCGACTAAATTGTGCAGAAACCCCGAAATCAAGTTTATCCGACTGCGAGACAACCGTGCGAGcgcagaaaagaagaagaaagaagagaagaagaagaaagacagGTGGAGagtgcagagagaagaggaggtgaagaaggacagcagagagaaggagtTCATCGAGGTTTACATCAGCTCGCTGAAGGACAGAGACACAGTCCCTGAATCCACCACCAAGGTCTCCATCTCCTGCCTGctgtgaggaagaggaggaagataaAGCTGACGTCTGTCATCACGTGAGAGACTGAAAGATAATTTGAAGCAGCATTTTCAAAGCAGCGCTAGAAAAGATACAAAATCACAATAAAACTGTTTCATTCATGGGATACCAGACTCTCATCTATAAAAGGCAGCGCATTGCATTACGGGATTGTTAGCAGAAAGTAATGTTGGCCTACATGCTGTCGACAAAAGCTTAACACTGTGAAGTTCATTCCTgccaaggggaaaaaaatgtaaatgataaaaaatctaaataatcaaatttaatttcaaaatgatccctttgaacactatTTAATATAGTTTAATATTTAtcctggacaactcgctgtaggGATGCATgtatggtgatgcccaaatatgtaattttgctttgggttggtattgtaacaCTAATGGCTGATGTCACATgcctgttgttcaataaaagattagatttattccagttaattttatagCTGGAGATTCAGCCAAATTCGTTGAAgatcttaagaatttttggaatagagtcctcaagatcagagatgtacaacaaaatatcatctgcaaataacaATATTGAGCTGTTACTAAGTCTACCTTCTGACAAGTCAACACTGACATTTTAACTCTTAAATACTCAATATATTAAAAAgtaaattgaaataaaataaaattacttCCTTAAATTAAATTATGATTATGCCACATTATCATACATTTGACAAGTTTTTACTATTTTAGAAGTTTGACTTTGGATTTaaattgttttgtcatttttaacatttcatCTATTCCCCGCCCCCCCTTGTCAGTAATGAACTTCCATAGTTTTCTACAatctggtttatttgcatgtatcCCTGCTATCAGATACTTTTTAAATTTGATGTTTGAGTGCTTTTAAATTAATTTCTGCATTtcaaaaaaaaccttttcattCCAAAATCAGATTTCCAACATTTAAACAGTTTGACGTCAACTCATTGAAGTTCACTGCTTCATTATAAACCGTGATCACAAACAtaatttacaatttaatgttttgaacGGTTAATCTTGGAGTACcacactgtacagtatatctgtcTGTGCAGCGAATGTGaggattttgttttaatgttttgttttctccacacaaacacattggaGACATATCTGGGAGAAACTGGATTTTATGGTTGAAGGTGTAAATGTGACCAAACAGAAACGAGGCTGAACGTCAGAAAAATTAAAGATAGATTCATTTCTGCAACAAAATGTGTAAGTGCAAATTACAAACACATTTAGTGATTATTCCCaagtgttttaacttttatatttttattagttgTGTAACTGATTTTTCTGTGTGACGCTTTGAGAAGT

Function

NR:

description
leucine-rich repeat-containing protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803702.1 True 2611 mRNA 0.42 10 15242850 15252339
XM_039803703.1 False 2608 mRNA 0.42 10 15242850 15252339

Neighbor

gene id symbol gene type direction distance location
LOC120560530 NA coding upstream 261233 14979874 ~ 14981617 (+)
c5 NA coding upstream 317913 14891572 ~ 14924937 (+)
prdm12b LOC102306279,LOC102776562,LOC102208027,LOC101478941 coding upstream 356396 14878628 ~ 14886454 (+)
LOC120560087 LOC103371518 coding upstream 375195 14842071 ~ 14867655 (+)
kazald3 kazald1,LOC107097908 coding upstream 470698 14767716 ~ 14772152 (+)
mak16 mak16 coding downstream 46061 15298400 ~ 15306100 (+)
LOC120561495 NA coding downstream 46203 15298542 ~ 15298643 (+)
LOC120560841 ppp2cb,LOC100710281,LOC105920955,LOC101157601,LOC103131405 coding downstream 164117 15416456 ~ 15430582 (+)
LOC120560844 LOC104935222,LOC101481450,LOC102294942,LOC106534038,LOC108245882,LOC100710015,LOC107386134 coding downstream 183402 15435741 ~ 15467408 (+)
LOC120560525 NA coding downstream 256583 15508922 ~ 15520405 (+)
G61757 NA non-coding upstream 1408 15240416 ~ 15241442 (+)
G61754 NA non-coding upstream 17881 15224547 ~ 15224969 (+)
G61756 NA non-coding upstream 18385 15224114 ~ 15224465 (+)
G61730 LOC102301232,LOC102776762,LOC101476977 non-coding upstream 90299 15146100 ~ 15152551 (+)
G61540 NA non-coding upstream 215032 15027605 ~ 15027818 (+)
G61770 LOC103398011,LOC102234551,LOC103373450,LOC107386141,LOC106527788 non-coding downstream 54108 15306447 ~ 15314578 (+)
G61782 LOC106527778 non-coding downstream 122438 15374777 ~ 15376002 (+)
G61867 NA non-coding downstream 280528 15532867 ~ 15572973 (+)
LOC120560847 NA non-coding downstream 287016 15539355 ~ 15539844 (+)
LOC120560848 NA non-coding downstream 288530 15540869 ~ 15545477 (+)
nudt18 nudt18,LOC104957221 other upstream 18835 15219137 ~ 15224015 (+)
G61535 LOC103368073 other upstream 159402 15078874 ~ 15083448 (+)
cntrl NA other upstream 263053 14928373 ~ 14979797 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other upstream 446907 14774513 ~ 14795943 (+)
G61514 surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other upstream 448248 14699525 ~ 14794602 (+)
zgc:101664 NA other downstream 179369 15431708 ~ 15434935 (+)
LOC120560526 NA other downstream 266441 15518780 ~ 15532796 (+)
mctp1a mctp1,LOC102782783 other downstream 384459 15636798 ~ 15777141 (+)
fam172a fam172a,LOC102785942 other downstream 691359 15943698 ~ 16099484 (+)
LOC120560890 NA other downstream 1215971 16468310 ~ 16475905 (+)

Expression


Co-expression Network