si:dkey-283b1.6


Basic Information

Item Value
gene id si:dkey-283b1.6
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 27962610 ~ 27966429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803842.1
ggccgctgcgttgaagaataaacctctatagatgggcacctgctctaccagGTTCGTACTGTGTTTTTCTGACTCCACTTCCATTTTGGTCCATCAGGAGTTTATCAACAGAGCTTTAAGGATGCCAAGTGACTACATTCCCATTCTAGAGATCTTCATGGGCATTATGGGCTTCGGCCTCTCCATCATGTTCTGCACGACCTTCTGCAGGGCGTGCTTTCGCTTTAGAGAGGACCAGATAGAGAGGGAGGTGTGGCGACGCACTGACCAGGAGGCGCGCCCTCCTCCCATATTTTTCATCCCTTTCCATGGAAGTTTGTCACGCCAGGACAGCGAAGACCAAACCAGGATGCCTCACTACAGCCAGGAGCTCCCCACACCACCACAATATAGCAATGATGTATACTGTGGGCCACCACCATCCTATAATGAGCTGGAATTGAAGCCTGAGGATCTTCCCCCTGTGTACACAGAGTATAATGTCCCTGTGTATCCTCCATCTCACACAGACATGgttcatccacacacacagtcataacaATAAGCCAGGACCGTCACACTGCCTGTGTGGAAGTTATGGACACTCTTGATTATTGAGCTGCCTCATGGGCTTGAGTGAACTGGCACTGTTGTTTATAATGtttcaaagattatttttattttattatcaagcttgtttattttattgtgaTAATGAATGCGATGATGGCACAGAGGGGATAAAAgctgcagaaatatgaaatggCATCAGGTTTAAAGCTACAACACCTGGAGTATACAGCACATTCTCTGAGCCACTAAAACACTTAGaaatagaaatatattttatttgactCTGTATGGTGATTGATAAAATGGGATATGTGCTCATCATTTTCCTACCTGAAATTATCTCCAACAAAGAGGTTTTTCTTCTGGTTTGTTTGCATGTCTGTCTGATGTCAAAATCATGTTAAAGGTATTAATGAAATGAATGTGAATTGAAATGGGAAGGTGAATCCAATGGTGCCACTATGTGGCcttttataaagcactttgtcGTGGCTCATGCCTCCTGAATCATGAGGAGTGGGTGCAGAATTTCCATTAAAAGTTTTCTCACCACTTTT
>XM_039803843.1
ccctggacTGAAGGTTCGTACTGTGTTTTTCTGACTCCACTTCCATTTTGGTCCATCAGGAGTTTATCAACAGAGCTTTAAGGATGCCAAGTGACTACATTCCCATTCTAGAGATCTTCATGGGCATTATGGGCTTCGGCCTCTCCATCATGTTCTGCACGACCTTCTGCAGGGCGTGCTTTCGCTTTAGAGAGGACCAGATAGAGAGGGAGGTGTGGCGACGCACTGACCAGGAGGCGCGCCCTCCTCCCATATTTTTCATCCCTTTCCATGGAAGTTTGTCACGCCAGGACAGCGAAGACCAAACCAGGATGCCTCACTACAGCCAGGAGCTCCCCACACCACCACAATATAGCAATGATGTATACTGTGGGCCACCACCATCCTATAATGAGCTGGAATTGAAGCCTGAGGATCTTCCCCCTGTGTACACAGAGTATAATGTCCCTGTGTATCCTCCATCTCACACAGACATGgttcatccacacacacagtcataacaATAAGCCAGGACCGTCACACTGCCTGTGTGGAAGTTATGGACACTCTTGATTATTGAGCTGCCTCATGGGCTTGAGTGAACTGGCACTGTTGTTTATAATGtttcaaagattatttttattttattatcaagcttgtttattttattgtgaTAATGAATGCGATGATGGCACAGAGGGGATAAAAgctgcagaaatatgaaatggCATCAGGTTTAAAGCTACAACACCTGGAGTATACAGCACATTCTCTGAGCCACTAAAACACTTAGaaatagaaatatattttatttgactCTGTATGGTGATTGATAAAATGGGATATGTGCTCATCATTTTCCTACCTGAAATTATCTCCAACAAAGAGGTTTTTCTTCTGGTTTGTTTGCATGTCTGTCTGATGTCAAAATCATGTTAAAGGTATTAATGAAATGAATGTGAATTGAAATGGGAAGGTGAATCCAATGGTGCCACTATGTGGCcttttataaagcactttgtcGTGGCTCATGCCTCCTGAATCATGAGGAGTGGGTGCAGAATTTCCATTAAAAGTTTTCTCACCACTTTT

Function

NR:

description
uncharacterized protein LOC110486142 isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04142 Lysosome
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803842.1 True 1109 mRNA 0.43 4 27963646 27966429
XM_039803843.1 False 1071 mRNA 0.43 4 27962610 27966429

Neighbor

gene id symbol gene type direction distance location
erap1b LOC101472801,LOC102299978,LOC102201916,LOC100710174 coding upstream 5177 27941339 ~ 27957433 (+)
LOC120560289 fam214b coding upstream 38388 27875794 ~ 27924222 (+)
cenatac ccdc84,LOC102776288 coding upstream 87654 27864528 ~ 27874956 (+)
tars1 tars,LOC105928389,LOC101077004 coding upstream 256987 27688436 ~ 27705623 (+)
tmem8b tmem8b coding upstream 300829 27626978 ~ 27661781 (+)
si:dkey-164f24.2 NA coding downstream 19694 27986123 ~ 28001022 (+)
aacs aacs coding downstream 68350 28034779 ~ 28078903 (+)
si:dkey-215k6.1 LOC103358522,LOC102778795,LOC102301725 coding downstream 151485 28117914 ~ 28422043 (+)
jak2b LOC103366422 coding downstream 808470 28774899 ~ 28800682 (+)
zgc:114041 NA coding downstream 840924 28807353 ~ 28812996 (+)
G65272 NA non-coding upstream 57677 27903075 ~ 27904933 (+)
G65171 NA non-coding upstream 485644 27476748 ~ 27476966 (+)
G65108 NA non-coding upstream 572748 27389457 ~ 27389862 (+)
G65106 NA non-coding upstream 583395 27378998 ~ 27379215 (+)
G65083 NA non-coding upstream 762420 27199949 ~ 27200190 (+)
G65314 NA non-coding downstream 36110 28002539 ~ 28005121 (+)
G65362 NA non-coding downstream 405027 28371456 ~ 28371841 (+)
G65378 NA non-coding downstream 496196 28462625 ~ 28463104 (+)
G65385 NA non-coding downstream 654656 28621085 ~ 28621299 (+)
G65394 NA non-coding downstream 789436 28755865 ~ 28756193 (+)
G65084 lipg other upstream 591651 27205234 ~ 27370959 (+)
ndufs4 ndufs4 other upstream 923011 27012210 ~ 27039599 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other upstream 1300715 26644661 ~ 26661895 (+)
cltcl1 LOC100691387,LOC103359525 other upstream 1318443 26614237 ~ 26644167 (+)
c6h22orf39 clg12h22orf39 other upstream 1465623 26494284 ~ 26496987 (+)
mboat4 NA other downstream 879197 28845626 ~ 28849471 (+)
ubac1 ubac1 other downstream 1378151 29344580 ~ 29351756 (+)
fbxo21 fbxo21 other downstream 2220419 30186848 ~ 30212108 (+)
LOC120560820 NA other downstream 2280458 30246887 ~ 30251519 (+)
G65899 taok3 other downstream 2607657 30574086 ~ 30578159 (+)

Expression


Co-expression Network