gtf2h2 (LOC100696048,LOC102788170,LOC101466805,LOC102292669,LOC102204724)


Basic Information

Item Value
gene id gtf2h2
gene name LOC100696048,LOC102788170,LOC101466805,LOC102292669,LOC102204724
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11218951 ~ 11231887 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804304.1
ACAGATCCTATCCCCTGACCTATCGCATTCTAAcaccaaccaatcgagctgcttcgtagggcgggacttgcgtagaagttacgtgggatccTTATTGTAGCTACAACTGATTTTTAACTAACGGAACGCTTGCATAGTGAGAAAACATAATGGATGAAGAACCAGAGAGAGCCAAGCGCTGGGAAGGGGGCTATGAGAGGACATGGGAGGTGCTGAAGGAGGACGAATCTGGCTCACTAAAAGCCACAGTGGAAGAGATCCTGTTCCAGTCCAAAAGGaaaagGGTGATAGAGAGCCATGGACAAGTAAGGCTTGGAATGATGCGGCACCTCCATGTGGTGATTGACTGTTCAAGAAGTATGGAAGACCAGGACTTGAAACCAAACCGCCTCACCTCTACTCTAAAGctGTTGGAAACTTTTGTTGATGAGTATTTTGACCAAAACCCCATCAGTCAGCTAGGCATTATCACCACGAAGAATAAAAGGGCTGAGAAGCTTACTGATCTGGCAGGAAATCCAAAGAAGCACACTGCTGCTCTGAAGAAAGCAGTGGACACTGTGTGTTTAGGAGAGCCATCCATATACAACTCTCTCAACCTGGCCATACAGACCCTCAAGCACATGCCTGGACATACAAGCCGGGAGATCCTGATAATCCTCAGCAGCCTTACTACATGTGACCCAGCCAACATCTGTGAGCTGATTAAGACCCTAAAGTCTCTGAAAGTGCGCGTGTCTGTAATCGGCCTGTCAGCAGAGGTCAGGGTGTGTACAGTATTGACCAGGGAGACGGGCGGGTCGTACCACGTTATCCTGGATGAGAGCCACTTCAAAGAGCTGCTGATGCTGCATGTCAAACCTCCTCCAGCCAGCTCCTCATCTGAATGTTCTTTAATACGCATGGGTTTTCCTCAGCACACCACCGCCTCTCTGACTGACCAGGATGCCAAGCCTTCATTCAGCATGTCtCATCTGGACAGCAGCAGTGCACCAGGTCTGTCTCTGGGAGGATACTTCTGTCCGCAGTGCCACGCCAAGTACACAGAGCTTCCCGTAGAGTGTAAAGTCTGTGGTTTGACTCTGGTGTCGGCTCCCCATCTCGCCAGATCTTTCCACCACCTCTTCCCCCTCCAAGCCTTTATAGAGAGTCCTGTGGAGGAGTTTCAAGAAGACAGGTTCTGTCAAGCTTGTCAAGGGGAGCTGAAAGATAAAAGTatATTCACCTGTCCATCATGTCGCAGTGTGTTCTGTGTGGAGTGTGATCTCTTCATCCATGACTTGCTACACTGCTGCCCTTGCTGTATTCACAGTCAGAGCGCCCCCTGAAGCTGAGAAGCTAACCGAGACAGAGACTGAAATAAACTCAGTGGTCATGTGATCTTATTGACTCATCATATCCGTCCTATCAGTGTCGTGCACCTCTGATAGAATAGATATGATGCACACAGGCTATGGACCATCCAGATTGTCACATTTCAAAGTTGTTGAAGATTGCCACAAAATATTGGACCGTTTCAGTTGATACATATCATTTACAGGTGAAAGCAGCTTCTTGCTAAAGACCGTGCTGAGTTGGGCTAAAGTTTCTGTCTGCTCTGAGAACTGCATCTGAGCCACTGCACTACTGCTTTTAAATCACACACTGCTTTATATGAGCCAGAAATGGTTTGTGTGCATTGTTTATACACATTTTTGTACTACAGTTCTAGTTACTTTATACAAAGTCTATGGTTCTGTTTGTGACAGGACAGTTACAATTTTTTAACCAGTGAGACATTTGTTTCAAAGCAGGCCTTTTTCCAATAACCCAGATTTTCTACTTTCAAATCCGTACTCTTGGATTTCCTATGCTAAATTTAGGGTAAGAGGCAGCTGCCCCTAGGGCTGGTCACAGTAAAATAAATCAGTACTTGTATGTTGTCACATTAAGCCTAACATTGTTAATGTTGGATATACAGTTACTTCAACAGAA
>XM_039804305.1
atcgagctgcttcgtagggcgggacttgcgtagaagttacgtgggatccTTATTGTAGCTACAACTGATTTTTAACTAACGGAACGCTTGCATAGTGAGAAAGTAAGTTGTATCACGCACAATATTAAGACATAATGGATGAAGAACCAGAGAGAGCCAAGCGCTGGGAAGGGGGCTATGAGAGGACATGGGAGGTGCTGAAGGAGGACGAATCTGGCTCACTAAAAGCCACAGTGGAAGAGATCCTGTTCCAGTCCAAAAGGaaaagGGTGATAGAGAGCCATGGACAAGTAAGGCTTGGAATGATGCGGCACCTCCATGTGGTGATTGACTGTTCAAGAAGTATGGAAGACCAGGACTTGAAACCAAACCGCCTCACCTCTACTCTAAAGctGTTGGAAACTTTTGTTGATGAGTATTTTGACCAAAACCCCATCAGTCAGCTAGGCATTATCACCACGAAGAATAAAAGGGCTGAGAAGCTTACTGATCTGGCAGGAAATCCAAAGAAGCACACTGCTGCTCTGAAGAAAGCAGTGGACACTGTGTGTTTAGGAGAGCCATCCATATACAACTCTCTCAACCTGGCCATACAGACCCTCAAGCACATGCCTGGACATACAAGCCGGGAGATCCTGATAATCCTCAGCAGCCTTACTACATGTGACCCAGCCAACATCTGTGAGCTGATTAAGACCCTAAAGTCTCTGAAAGTGCGCGTGTCTGTAATCGGCCTGTCAGCAGAGGTCAGGGTGTGTACAGTATTGACCAGGGAGACGGGCGGGTCGTACCACGTTATCCTGGATGAGAGCCACTTCAAAGAGCTGCTGATGCTGCATGTCAAACCTCCTCCAGCCAGCTCCTCATCTGAATGTTCTTTAATACGCATGGGTTTTCCTCAGCACACCACCGCCTCTCTGACTGACCAGGATGCCAAGCCTTCATTCAGCATGTCtCATCTGGACAGCAGCAGTGCACCAGGTCTGTCTCTGGGAGGATACTTCTGTCCGCAGTGCCACGCCAAGTACACAGAGCTTCCCGTAGAGTGTAAAGTCTGTGGTTTGACTCTGGTGTCGGCTCCCCATCTCGCCAGATCTTTCCACCACCTCTTCCCCCTCCAAGCCTTTATAGAGAGTCCTGTGGAGGAGTTTCAAGAAGACAGGTTCTGTCAAGCTTGTCAAGGGGAGCTGAAAGATAAAAGTatATTCACCTGTCCATCATGTCGCAGTGTGTTCTGTGTGGAGTGTGATCTCTTCATCCATGACTTGCTACACTGCTGCCCTTGCTGTATTCACAGTCAGAGCGCCCCCTGAAGCTGAGAAGCTAACCGAGACAGAGACTGAAATAAACTCAGTGGTCATGTGATCTTATTGACTCATCATATCCGTCCTATCAGTGTCGTGCACCTCTGATAGAATAGATATGATGCACACAGGCTATGGACCATCCAGATTGTCACATTTCAAAGTTGTTGAAGATTGCCACAAAATATTGGACCGTTTCAGTTGATACATATCATTTACAGGTGAAAGCAGCTTCTTGCTAAAGACCGTGCTGAGTTGGGCTAAAGTTTCTGTCTGCTCTGAGAACTGCATCTGAGCCACTGCACTACTGCTTTTAAATCACACACTGCTTTATATGAGCCAGAAATGGTTTGTGTGCATTGTTTATACACATTTTTGTACTACAGTTCTAGTTACTTTATACAAAGTCTATGGTTCTGTTTGTGACAGGACAGTTACAATTTTTTAACCAGTGAGACATTTGTTTCAAAGCAGGCCTTTTTCCAATAACCCAGATTTTCTACTTTCAAATCCGTACTCTTGGATTTCCTATGCTAAATTTAGGGTAAGAGGCAGCTGCCCCTAGGGCTGGTCACAGTAAAATAAATCAGTACTTGTATGTTGTCACATTAAGCCTAACATTGTTAATGTTGGATATACAGTTACTTCAACAGAA

Function

NR:

description
general transcription factor IIH subunit 2-like protein isoform X1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03142 TFIIH2, GTF2H2, SSL1; transcription initiation factor TFIIH subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804304.1 True 1974 mRNA 0.46 15 11218951 11231887
XM_039804305.1 False 1959 mRNA 0.46 15 11218993 11231887

Neighbor

gene id symbol gene type direction distance location
oclnb LOC104926565,LOC103397562 coding upstream 12839 11193487 ~ 11206112 (+)
marveld2b LOC104926564,LOC103371582,LOC102788930,LOC102293847,LOC101466532 coding upstream 30740 11173019 ~ 11188211 (+)
LOC120560494 NA coding upstream 1843205 9368199 ~ 9375746 (+)
tcima LOC104938922,LOC102777577,LOC103152810,LOC103353800,LOC101487124,LOC102217691 coding upstream 2084371 9133547 ~ 9134580 (+)
LOC120560490 abcb9 coding upstream 2229588 8972286 ~ 8989363 (+)
ankrd34bb NA coding downstream 43131 11275018 ~ 11277484 (+)
LOC120561249 fut7,LOC103353858 coding downstream 342093 11573980 ~ 11576354 (+)
stxbp1b LOC103353854,LOC103141940,LOC100712335 coding downstream 496575 11728462 ~ 11790629 (+)
LOC120561470 LOC107749966 coding downstream 605871 11837758 ~ 11848140 (+)
dpp7 dpp7 coding downstream 889538 12121425 ~ 12158698 (+)
G60723 NA non-coding upstream 4851 11211588 ~ 11214100 (+)
G60698 NA non-coding upstream 60717 11157934 ~ 11158234 (+)
G60682 NA non-coding upstream 98907 11119777 ~ 11120044 (+)
G60620 NA non-coding upstream 313322 10902061 ~ 10905629 (+)
G60607 NA non-coding upstream 366045 10812779 ~ 10852906 (+)
G60730 NA non-coding downstream 2460 11234347 ~ 11234580 (+)
G60780 NA non-coding downstream 256479 11488366 ~ 11544659 (+)
LOC120561253 NA non-coding downstream 296162 11528049 ~ 11528755 (+)
G60821 NA non-coding downstream 371293 11603180 ~ 11603611 (+)
G60822 NA non-coding downstream 371891 11603778 ~ 11604436 (+)
LOC120561144 NA other upstream 466511 10748116 ~ 10752440 (+)
LOC120561142 NA other upstream 471998 10726438 ~ 10746953 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other upstream 1237897 9926950 ~ 9981054 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other upstream 2163186 9017891 ~ 9055765 (+)
vps37ba vps37b,vps37c,LOC102776795 other upstream 2204048 8991441 ~ 9014903 (+)
G60897 NA other downstream 694296 11926183 ~ 11926601 (+)
G61139 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 other downstream 1689260 12921147 ~ 12923836 (+)
LOC120560904 crb2,LOC103353841,LOC106959700,LOC106929552 other downstream 1900211 13132098 ~ 13180491 (+)
G61337 LOC100705941,LOC102292089,LOC108234925,LOC106529513,LOC104934772,LOC103365846 other downstream 2875596 14107483 ~ 14109546 (+)
G61338 htr7,LOC104934772,LOC101065316 other downstream 2909555 14141442 ~ 14142050 (+)

Expression


Co-expression Network