tcima (LOC104938922,LOC102777577,LOC103152810,LOC103353800,LOC101487124,LOC102217691)


Basic Information

Item Value
gene id tcima
gene name LOC104938922,LOC102777577,LOC103152810,LOC103353800,LOC101487124,LOC102217691
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 9133547 ~ 9134580 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804518.1
TCAGAGGCTCAGCTCTCCGCTACTCACTCATTACTCACCCAAACCCAAAGCAGTGCGCACCTAACAACTCATCCTCGCCGAGTTGGAGGGCCACTCTTGGAGCAGAAAAACCAGGACATCCAGCCGAGAAACAAAGACAAGATGTCGTCCTACATGTCATCCGAATGCCACCGTGTCAGCCCAACTGTCCACGGCAACAAGTTTGACACGGCGCACCGTAAAAAGGCCGTGGCCAACATTTTCGAAAAGGTCAACCAGGACTCGCTGATGAGACTTTTCCAGAAAACGGGCGACATGAAGGCGGAGGAGAGAGTGAGGAGCATCTTCTCCTACACCCAGGACCCGGAGGAGACGGCCCGTGCCCTGATGGCTCTGAAGCAGCGAAAGAAGGACAAGTTCCTCCAGATCGCGGGCATGGTCCGTCAGCTGCTAACAATGAGTTGACTGTGTTTTACCAGTCCCTTACCGCCTGTGTCTATGTCGGCTCACGTGTGAGCCGAATGTGAAAACACTCCCAATATGACTGGGTTACCGCCGCAGATGCGGCTCACCTTTCGCCTGAAAAAGGAGCGTCAGGTGCGGAGGAGAATGCGCAGCCGGCCGCCTGGAGGGGCAACATGCTGTAGCTGTCGCCTCGTGGATGGAGGTGACAGCGGAGAGTCCTGCCTGAAACGGATGAGGCCTGACGAACTGACTGGGAATATGAAGGGCATACACTACTTTCCTGAGACTTGAATTTATGAACGCATTCCTGTGGATGCCTGACTGTGAAGCAGCCCATTGTACAGGTGCACATTACGTCGGTGCATGGCTGCAATATGAGACTTTATAGTGCCGAAAAAACTGCCTACAGGAAAGCCTGTCCTGAACACATGCCTTGTCTCTCAGCTTCACTTTTGTAATATGAAAACTACTCATTAGTGGCCACTAATGTGTTATTGTCACAAAATGTTATAGCACAATAATTTGCATTCATGATAAGTTCCtttgtttgtaatttttttaaataaattatttcattcTATACAAAAGTT

Function

NR:

description
PREDICTED: protein C8orf4 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804518.1 True 1034 mRNA 0.50 1 9133547 9134580

Neighbor

gene id symbol gene type direction distance location
LOC120560490 abcb9 coding upstream 144184 8972286 ~ 8989363 (+)
LOC120560802 abcb9,LOC106965289 coding upstream 168441 8939829 ~ 8965106 (+)
zgc:113436 LOC102776507 coding upstream 200294 8922283 ~ 8933253 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding upstream 225823 8861970 ~ 8907724 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding upstream 296574 8810554 ~ 8836973 (+)
LOC120560494 NA coding downstream 233619 9368199 ~ 9375746 (+)
marveld2b LOC104926564,LOC103371582,LOC102788930,LOC102293847,LOC101466532 coding downstream 2038439 11173019 ~ 11188211 (+)
oclnb LOC104926565,LOC103397562 coding downstream 2058907 11193487 ~ 11206112 (+)
gtf2h2 LOC100696048,LOC102788170,LOC101466805,LOC102292669,LOC102204724 coding downstream 2084371 11218951 ~ 11231887 (+)
ankrd34bb NA coding downstream 2140438 11275018 ~ 11277484 (+)
G60273 NA non-coding upstream 142543 8989818 ~ 8991004 (+)
G60275 NA non-coding upstream 143834 8965505 ~ 8989713 (+)
G60232 NA non-coding upstream 203719 8854273 ~ 8929828 (+)
G60229 NA non-coding upstream 277117 8833627 ~ 8856430 (+)
G60223 NA non-coding upstream 348627 8784653 ~ 8784920 (+)
trnaq-cug_4 NA non-coding downstream 78662 9213242 ~ 9213313 (+)
G60363 NA non-coding downstream 148232 9282812 ~ 9283636 (+)
G60378 NA non-coding downstream 329348 9463928 ~ 9464187 (+)
G60387 NA non-coding downstream 356430 9491010 ~ 9491626 (+)
G60410 NA non-coding downstream 637178 9771758 ~ 9772052 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other upstream 77782 9017891 ~ 9055765 (+)
vps37ba vps37b,vps37c,LOC102776795 other upstream 118644 8991441 ~ 9014903 (+)
LOC120560007 NA other upstream 698875 8431537 ~ 8434672 (+)
LOC120560006 NA other upstream 705802 8423189 ~ 8427745 (+)
cux2b cux2,LOC102795992 other upstream 1082207 7947252 ~ 8051340 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 792370 9926950 ~ 9981054 (+)
LOC120561142 NA other downstream 1591858 10726438 ~ 10746953 (+)
LOC120561144 NA other downstream 1613536 10748116 ~ 10752440 (+)
G60897 NA other downstream 2791603 11926183 ~ 11926601 (+)
G61139 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 other downstream 3786567 12921147 ~ 12923836 (+)

Expression


Co-expression Network