si:dkey-90l8.3 (LOC104923788,LOC103353846)


Basic Information

Item Value
gene id si:dkey-90l8.3
gene name LOC104923788,LOC103353846
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12860590 ~ 12865252 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804579.1
CTTGCGCAATTTGATGAATAGTGTCGCTGTCAAAAGCGTTAGAAACAGATGAAGGAATGTTGATAGATTGGCAGCTGTAACAGAAAGGACAGGAAGAGAAGCTGCGTCATGTCTCCTCCTCACGGTTACATGCAACGTTAGTTATTAACCTTCGGAGCTTGATGTCGGTGAGAGTTTGCTCAACTATTACCGTCACTGTGCCGTCCGTCCCGGGCTCAATGTTGTGTTGCGCTGCCTTTTTTCTGGAAAGCTATGGAGACCAGAACATGTCAAGTGTAAGTGTTTCAACTGTACGCGTGTCGAGGTTCTTGTGAATATTTTTCCACCTTCTCAAACTTCAACGCAGGAGGGAAACCTTTGGCTCGGCAAGGAGCCTTTGAGGGCCCACATCAGCATGGTGAACAGCCAAGCGTCGGGTGTACCGCCGACCCCCAGGTCGTGTGCAGGATGTGGGGGGAAGATCGCCGACCGCTTCCTGCTCTTCTCCATGGAGCGCTACTGGCACACTCGTTGCCTCAAGTGCTCTTGCTGCCAAGCCCAGCTGGGGGACATTGGCACCACCTGCTACAGCAAAGGGGGCATGATTCTGTGTCGGAGCGACTACATCAGACTGTTCGGGCACAGCGGGGCGTGTAGCGCCTGCGGCCAGTCGATCCCAGCCAACGAAATGGTGATGAGGGCGCAGGGAAATGTTTACCACCTCAAGTGTTTCAGCTGTGCCACCTGTAGAAACAGACTGGTGCCTGGCGATCGCTTCCATTACATCAACGGTACAATCTTCTGTGAGCACGACAGACCCGGCGCTGTCTTGATCAACAGCCACCTGCCTCCACTTCAGAGCAACTCTGTGCTGACAGACCAGAAGGTATGCTGAGTGGCAGAAGTGCTGTGTCTTGCCCTCGCCTCCCCACCCCGAGCTTCACTTCTCTTCGGTGCACTATTCTCCTCCTGCTACTGTCGTTATTGTTGTGGAGTCTCGTCACTGCCCCGCTTCTTTTCCCCCGGGGGAGGACGCAATTTCTCACCAGGATCCCCGTTTGTCACCATATCAGAGACTCTCTATTCCGCATACGAAGtcacatttatgttgtgttcaatgtCAGAGTGGTCTGTGCATCATCAACAACTTACGTTATGTGTGGACTGCACTAGCAAAAGGCTTCTTCGGGATTTAGAGAAAGCTGTGGAGGAAAACAATGAGGATGAAAGCCTGCGCCGATTGGAAGAGGAAATAAAAGATGCTTGAATGAACACTTGATGGACTGCTGTAAAATGACTGTCAAAGGCTTTGCTTTGTGCCATGTGGCATTATTTCCCCTGAGCGTCAGTGTTTTTAATGAACTCTTGATCTCGCTCTCGAATATGTAAATCTGAGATCGTACACACTGAGGATTCAACACAAAATTGATGGGAGTCAGGCAAAAATCTGAGTATCTGAAAATGTTCATAGGTCATAGGAAACCTTgaaactaattaaaaaaaaaaaaacctacaccAGAAACTTTTGAAACTCTCAGAAATCACAGAAATCTAATGTTACTGTATGATTACAATTACTATACTtactactatttttttttttttcagatgccCTTCACAAAGAACTGAAATGATGTGAAGGTTTTGTTCCATTTCTTCTGTAGAGTTTTAGTTCTTTATCAGATGCCGGGTTCAATGTGTGAAAAACAAATTGTggggttaaaaacaaaaatcctaTTAAAATGATTTTTCTGTAACATGTCACGGAGTGAGCTGAGGTCATTTTGAAGCCCCTTAGCGGCATAAGAGTGGCATTGTATTGCATGGTACCTAGCATGGTGGATGTGACTGTTCTCTCTCGCTTTCTTTAGCCCTGTATGGTGAAAACATGCCTGATTACCCCGAGGAATGGAATTAGGGGGCTTGAGCTCTGACCATTTACAGAAGCAATTAAACATGAGCCCTGTATCTGTGCTGCTGGAGCTCTTGGGAGGCTGAACTTGGAGCATATCCCGTGGCTGACTGGCTCGGTGGCTGTCTGCTTCTAATAAAGCCTAATCTTAAAGCAGGCTAATTAAAGGGGAGTGGCCCCCTCTACATCCAGGGCATTTGAAACAATCTGATGTATTTACTGTTTACCATGTTCCAATTAAAGCTCCGACACAGA

Function

NR:

description
LIM domain transcription factor LMO4-B-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804579.1 True 2146 mRNA 0.47 5 12860590 12865252

Neighbor

gene id symbol gene type direction distance location
ccn1l2 LOC104943830 coding upstream 22683 12831272 ~ 12837907 (+)
fkbp15b NA coding upstream 66159 12752510 ~ 12794431 (+)
fgf17 fgf17,LOC100689794 coding upstream 112054 12740866 ~ 12748536 (+)
LOC120561040 NA coding upstream 359040 12474081 ~ 12501550 (+)
LOC120561039 NA coding upstream 374824 12474173 ~ 12485766 (+)
bcl2l16 LOC103353844,LOC104923787,LOC108246437,LOC104963815 coding downstream 44562 12909814 ~ 12932999 (+)
lhx2b lhx2 coding downstream 483889 13349141 ~ 13366210 (+)
adgrd2 NA coding downstream 702307 13567559 ~ 13646350 (+)
LOC120561313 olfml2a coding downstream 1004430 13869682 ~ 13902649 (+)
LOC120559997 NA coding downstream 1079786 13945038 ~ 13961157 (+)
G61091 NA non-coding upstream 178522 12679709 ~ 12682068 (+)
G61067 NA non-coding upstream 221730 12638608 ~ 12638860 (+)
G61053 NA non-coding upstream 251132 12609104 ~ 12609458 (+)
G61052 NA non-coding upstream 252533 12607644 ~ 12608057 (+)
G61050 NA non-coding upstream 256380 12603756 ~ 12604210 (+)
G61160 NA non-coding downstream 134207 12999459 ~ 12999887 (+)
G61192 NA non-coding downstream 316330 13181582 ~ 13182308 (+)
G61194 NA non-coding downstream 317367 13182619 ~ 13184450 (+)
G61232 NA non-coding downstream 559499 13424751 ~ 13424951 (+)
G61244 nr5a1,LOC101062876 non-coding downstream 782045 13647297 ~ 13651464 (+)
G60897 NA other upstream 933989 11926183 ~ 11926601 (+)
LOC120561144 NA other upstream 2108150 10748116 ~ 10752440 (+)
LOC120561142 NA other upstream 2113637 10726438 ~ 10746953 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other upstream 2879536 9926950 ~ 9981054 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other upstream 3804825 9017891 ~ 9055765 (+)
G61139 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 other downstream 55895 12921147 ~ 12923836 (+)
LOC120560904 crb2,LOC103353841,LOC106959700,LOC106929552 other downstream 266846 13132098 ~ 13180491 (+)
G61337 LOC100705941,LOC102292089,LOC108234925,LOC106529513,LOC104934772,LOC103365846 other downstream 1242231 14107483 ~ 14109546 (+)
G61338 htr7,LOC104934772,LOC101065316 other downstream 1276190 14141442 ~ 14142050 (+)
LOC120560400 tmem150a,LOC106585116 other downstream 1387004 14252256 ~ 14281771 (+)

Expression


Co-expression Network