XLOC_005273


Basic Information

Item Value
gene id XLOC_005273
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16964656 ~ 16966808 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011114
CAACTATAGTTGAAGTATAGacgaaagtaaaataaaataaataaataaaacataaccaTTGTTCATAATTAACACATTTATTAGATATTTACAAAATCGTTTATTAACAAATGAAGTTAGTTTTCAAATGATAGAACtcaaaatcaatataaaaatcTCTCAGTGACATGGATTTCAGACCTGTTCATTCTTTAAGTGAATCAGGGGTTCATATTCGATCAAATATTACACCATAAAGATTACATTTAAGATCTGTGTAGTGATGCTGTTTGACACTGAACACTGAATCAACTGAATTTAAAAGATTTCCAGTAAAGTTACACTGACTCAGATCACATATCAGACACATCTGTCAGGAGATTAAGGATATTTGCATGTAACATTTAACATCTGGTTATCTAAAATTATGCAATTTTGAAATCTAGTTATCTAAAATTATGCAATTTGTAAAGACATGATTTAGCTCTGGAAAAAGTTTATAATTCAGCTGTAATGGCCATTTCGAATTTAGAACATGCTGCCTGAAAACTGGGAATACAGTTTGGAACAGTCAAAATACATttatggaaagaaagaaagaaagaaagaaaggttaCGTACAGTTGAACATATAGGGCAAAGAATGAACATGCTTTAACATTTTGCTGGCTTACAAGAACAAAACCTGCTAAAAAAAGCAATTCGACTACATTAGATGAAGTAGTCCATTCAAGTGAAACGATGACACCCCTGTTCAGAAATCATCTACATGCTTGCTTTGCATTAGCTCAGTTCAAATACAATGTACCGACATGCATTCAGTCTGATGTGGCATATAGGAAAAagccaaacaacaaaaaaagaacatcTCTGAAATATACTGTTAAGGACTGAAGTATACACTGACATCTGGATTCAGCATTAGCAACAATACAGAGGATACAGAGATAAAGCCTTGTCTCCATCAGTGAAAGGCACCCCGTAACCATTGGAAGTTACTTTTGTGGCTCAAAGAGATGTTGGggacggggggggggggggggggggggatgccATAGTGCATAATCCAGACATCCAAATACAAAATGGCACCCCACTGCATAAGGCAATTCTAAGGGCTGAGCAGAGAAAGTAAAGCATGAATGGGCAAGAAAAAGGCAAAGATCTGGAGACTAATGTGATGCAAGAGATGTTACTGCAGCTAGAAGACACTTTAATGTCAGCACAGGTCTGATGTTGAGCTACAGTAACAACTACTACCGCAGGTTCAGTACAAACAAATAAGTGAGTATTATTCAGATCCTCTAATAGAAATTGCATCTTATTCCTCATCAATTTCTCTTAGTTTTGGTCTTTCCTGCATTCAAAatgatcaacaacaacaaaatctgcAAACTTAAACTATTAGCTTATTTTTTATAGAAGTGAATGTCTCTTGAGTTCACATTAACAGTGATGAGGCTAAATCAGCATATTTAAAAATGCTATGGCTCAAAGGAAGGGAAAGGCAATGCATTTTATTCTAGTAAGaacttatatttttaatcttaCATATTTAGACCGATTGCAACTTTTAAGAATTTTAGGATTATGTGGTTAACTTGCATTTGGTCAACAACCTGGAGCATTCAGAGTCAAAATgactatgattattattattattaaaggttaAACAGTGTTCAGGCATAAAGTTAATGAACCTCATGTTAATCTGTTAGGGgggaaaaaaagGCAAAATATTTTCAGTAACAGGTGACGTTCAAACTGAAAATGTTTAAAGGATGAAGGCATTTGGAAGAAGGTTTGAC
>TCONS_00011115
ACATTTATTAGATATTTACAAAATCGTTTATTAACAAATGAAGTTAGTTTTCAAATGATAGAACtcaaaatcaatataaaaatcTCTCAGTGACATGGATTTCAGACCTGTTCATTCTTTAAGTGAATCAGGGGTTCATATTCGATCAAATATTACACCATAAAGATTACATTTAAGATCTGTGTAGTGATGCTGTTTGACACTGAACACTGAATCAACTGAATTTAAAAGATTTCCAGTAAAGTTACACTGACTCAGATCACATATCAGACACATCTGTCAGGAGATTAAGGATATTTGCATGTAACATTTAACATCTGGTTATCTAAAATTATGCAATTTTGAAATCTAGTTATCTAAAATTATGCAATTTGTAAAGACATGATTTAGCTCTGGAAAAAGTTTATAATTCAGCTGTAATGGCCATTTCGAATTTAGAACATGCTGCCTGAAAACTGGGAATACAGTTTGGAACAGTCAAAATACATttatggaaagaaagaaagaaagaaagaaaggttaCGTACAGTTGAACATATAGGGCAAAGAATGAACATGCTTTAACATTTTGCTGGCTTACAAGAACAAAACCTGCTAAAAAAAGCAATTCGACTACATTAGATGAAGTAGTCCATTCAAGTGAAACGATGACACCCCTGTTCAGAAATCATCTACATGCTTGCTTTGCATTAGCTCAGTTCAAATACAATGTACCGACATGCATTCAGTCTGATGTGGCATATAGGAAAAagccaaacaacaaaaaaagaacatcTCTGAAATATACTGTTAAGGACTGAAGTATACACTGACATCTGGATTCAGCATTAGCAACAATACAGAGGATACAGAGATAAAGCCTTGTCTCCATCAGTGAAAGGCACCCCGTAACCATTGGAAGTTACTTTTGTGGCTCAAAGAGATGTTGGggacggggggggggggggggggggggatgccATAGTGCATAATCCAGACATCCAAATACAAAATGGCACCCCACTGCATAAGGCAATTCTAAGGGCTGAGCAGAGAAAGTAAAGCATGAATGGGCAAGAAAAAGGCAAAGATCTGGAGACTAATGTGATGCAAGAGATGTTACTGCAGCTAGAAGACACTTTAATGTCAGCACAGGTCTGATGTTGAGCTACAGTAACAACTACTACCGCAGGTTCAGTACAAACAAATAAGTGAGTATTATTCAGATCCTCTAATAGAAATTGCATCTTATTCCTCATCAATTTCTCTTAGTTTTGGTCTTTCCTGCATTCAAAatgatcaacaacaacaaaatctgcAAACTTAAACTATTAGCTTATTTTTTATAGAAGTGAATGTCTCTTGAGGgggaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011114 False 1787 lncRNA 0.34 2 16964656 16966808
TCONS_00011115 True 1353 lncRNA 0.36 2 16965104 16966735

Neighbor

gene id symbol gene type direction distance location
XLOC_005271 zgc:174855 coding downstream 13010 16938807 ~ 16951646 (-)
XLOC_005272 NA coding downstream 21408 16942204 ~ 16943248 (-)
XLOC_005270 si:dkey-26g8.5 coding downstream 41494 16919411 ~ 16923162 (-)
XLOC_005269 BX000534.2 coding downstream 62897 16901645 ~ 16901759 (-)
XLOC_005268 ctslb coding downstream 66516 16895644 ~ 16898140 (-)
XLOC_005274 ifit12 coding upstream 22312 16989120 ~ 16990896 (-)
XLOC_005275 BX000534.1 coding upstream 30398 16997206 ~ 16998442 (-)
XLOC_005276 ifit11 coding upstream 53097 17019905 ~ 17024079 (-)
XLOC_005277 ifit10 coding upstream 58918 17025726 ~ 17028255 (-)
XLOC_005278 ifit9 coding upstream 66686 17033494 ~ 17035339 (-)
XLOC_005265 BX322603.1 non-coding downstream 218109 16743052 ~ 16746547 (-)
XLOC_005263 BX465840.2 non-coding downstream 309861 16654681 ~ 16654795 (-)
XLOC_005260 BX465840.1 non-coding downstream 365799 16598743 ~ 16598857 (-)
XLOC_005289 dre-mir-2192 non-coding upstream 739984 17706792 ~ 17706901 (-)
XLOC_005291 NA non-coding upstream 754993 17721801 ~ 17727540 (-)
XLOC_005295 NA non-coding upstream 1257726 18224534 ~ 18227730 (-)
XLOC_005298 NA non-coding upstream 1486399 18453207 ~ 18454407 (-)

Expression


Co-expression Network