srr (LOC108279919,LOC108427077,LOC107726835,LOC105418280)


Basic Information

Item Value
gene id srr
gene name LOC108279919,LOC108427077,LOC107726835,LOC105418280
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15554273 ~ 15563716 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923836.2
GACCTGGCTGGGCAGTTTCTTGTCAAATAGCTAGCTGATATAAACAAgctttaatgtaatgtatgtgtaaaCATAGGTAGGTAAGTTAGTAGGGTTTTAAAACGACATCATTGTGTgattaatactgtatatatcacacGCGGAAGGAGTTTTCTGCCCGGAACGCCCACACAGAACCACAAACCCGGGGAAGACAATCTGCGGCGCTCCTGCGCTCCTGTAGCCAATAGTCTAGCAAAGcctcaagagaaagagaagagaagagaagttgAGCTGAGCATTTGACTCCACTAAATACACTGTGGGTGCAACATCAGACCCATAATCTACATCTCTAATGCCACACTCCAACGAGCTTCATGTCACTATTTGCCCAAAAGGGAAACGGCCTAAACCTATTTGTATTGGCCCAGACAAGTATAAATGCCAGTTCTGCAACAGGAAGGGGGAGTATGCTGCGCTTGTGGCTCACATACAGACCCATGAGAAAACAGCTATTgaatttcaagagaaaaaaatctacaaatgcAACCTAGGATGCAGTAAAAGCAGCCACTACCATTGCTGCTGCTGCAAGAGGACTATAATCTCACGAAATTACTTCACCGAACATATACACAAGTGCGGGTTATCCATAAACGTGCAGGTGCACACACCTTGTAGTTCTTCACTGGTCCCCAGCACTTCAACAGCATTGTCTAGTCACTCTGCCCCACCAATCAACACCTCAGTCCCTATATGCAGTGCCATTAATGGCTCAGAACGTCAGTGCAGTGAAGACAGTGCCACGGGGAGCCCGAATCTCCTTGACATTAAAGTCAAGTCACCCAGTCCTCCATCTTCACCTGCTTCTTTGACTGCCACAGTTACACCCTCTGACAGCCAGGATATTCTTATGTCTGTGAACCCAACCCACAATATCTGTGCTGGTAGTCTCAAAGTACTGACATCAAGGCCCAAACGAATCACGTGTTGCTTCTGCAATTTAATTCTGaacaagaaaaacatcaaaGTACACATTCAAAGACGACACATGTCGGCTAATCCAGACTTGCTGCAAACGAATGGACTAAGCCATACACACATTGCCTCTGGCAACATGGAGGACCTGGTAGCAGAAGGCATTACACTCAAGATGCTTAATGATGCTTGGCAGACGGTCATGAGCAGCCCTTTGGGAGTGATCAAAACACCCATGATCCTCTGGAGCCAGACCACACTGCCACTCCATGTGCCCTGTAACGCCTATCTGAAGTTGGAGAACATGCAGAGGACGgGGTCATTTAAGATTAGAGGTGTAGCAAATCAGTTTGCCCGAAGAGCCAGTGGGGGTAATTTTGTCACATTGTCTGCTGGGAATTATGGGAAGTCCTTTGCCTATGCCTCTAAACACTACGGAACTAAAGGCAAAGTGGTGATGCCTGAAACAGCTCCCATCTCCAGATCTCTGCTAATACAAAGTTTTGGCATCGAGGTTGAACGAGTGCCAACCCAGAGTCTTATGGAAGTTGTCAATCGATGTgttcaaaaggaaaaaatgacttTACTTCATTCCTACAATGATCTGGATCTCATAGCAGGACATGCCAGTCTGGGGTTTGAGATCCTGGAGGTGCTTCCTAATCCTGATGTGGTAGTAGTGTGCTGCGGTGGAGGGGGTTTACTGGCTGGAGTAGCAGCAGTGATTAAGCTTTCAGGTTGTGAGGACACAAGAATTTATGGAGTGGAACCAGAAGGAGCATGCACCATGTACAAAAGCTTCATTGAGAAAAAACCTGTTGGCATGGACAGCAAAAGCATCGCCTCTGGTCTTGCACCACCATCTGCAGGTGCCCTGCCATATGCGATGTGTCAGAAGTATGTGGACGAGATAGTGTTGGTGACTGATGATGAAATCAAGTCTGCCGTTTCTGCTCTCTACAAAGCCGGTCTAGTTGTGGAACCCTCAGGATCCGCTGCCTTTGCTGCCCTCGTTAACAACAGAATACCAGACATTACTGGCAGGACCGTTGTGGTAATCCTGAGTGGAGGGAACATCAGCAAAGAAGAGCTTACCAGCTTCCCggactgatttacacaatacCTCTGTCTTTGATTAGCTTAATGTATTACCTGTTGAGACTTTTAAAGATTTTTGAGGAGTGGATGAAGACTTACCTGACAGAGCCAAATCAACATCATTATTTTTCATACatggaaaacactaaaatcaaATTAGTTGGttgcataataaaataaacaaagtggTTATACCAAATTTCTGagtttatggttttt
>XM_034313341.1
ttggttatctgccacacctgatgcagcttaTCCAGGGCCTGATAACAAGCCCATAAATGGAACCAGGATTGATAGAGCAGGGAGagatctacagtatttgtttcattcttgctaatttcctgaccaatgatttgtttttaaaattaataaaatattaatattttgccattttgggcttggcccatttttcttgctcaGGAGTGTTTATACACATTGACAAAGATACAAAGTATACACACATATGGCCATAAAGTGAGTATAAGTATATGAGtataagtatgtggacacctgaccatcacacccatatgttggaagcacacaattgaaTAGAATTTCTTTAATTCAAATAGAATTTCTTTGCATGCTGTAACagtacaattttccttcactggaactaagaggcccaaacctgttccagcatgcccctgtgcacaatgcaagctccataaagacatggtttgctgatgatgatgtggaaGAACTGCACAACcacaacctcactgaacacctttgggatgaattgaaatGTCAACCCCAGGTCTCCTCATCCAGCATCATTGCCTGACtgcactaatgctcttgtggctgaatggacacaaatccccacagccacgctccaaaatctagttgaAAGCCATGCCAGAATAGTGGAggttggaatgggatgttcagcaacaagcacatatgggtgtgaaggtcaggtgtcctaCAGAAGcctcaagagaaagagaagagaagagaagttgAGCTGAGCATTTGACTCCACTAAATACACTGTGGGTGCAACATCAGACCCATAATCTACATCTCTAATGCCACACTCCAACGAGCTTCATGTCACTATTTGCCCAAAAGGGAAACGGCCTAAACCTATTTGTATTGGCCCAGACAAGTATAAATGCCAGTTCTGCAACAGGAAGGGGGAGTATGCTGCGCTTGTGGCTCACATACAGACCCATGAGAAAACAGCTATTgaatttcaagagaaaaaaatctacaaatgcAACCTAGGATGCAGTAAAAGCAGCCACTACCATTGCTGCTGCTGCAAGAGGACTATAATCTCACGAAATTACTTCACCGAACATATACACAAGTGCGGGTTATCCATAAACGTGCAGGTGCACACACCTTGTAGTTCTTCACTGGTCCCCAGCACTTCAACAGCATTGTCTAGTCACTCTGCCCCACCAATCAACACCTCAGTCCCTATATGCAGTGCCATTAATGGCTCAGAACGTCAGTGCAGTGAAGACAGTGCCACGGGGAGCCCGAATCTCCTTGACATTAAAGTCAAGTCACCCAGTCCTCCATCTTCACCTGCTTCTTTGACTGCCACAGTTACACCCTCTGACAGCCAGGATATTCTTATGTCTGTGAACCCAACCCACAATATCTGTGCTGGTAGTCTCAAAGTACTGACATCAAGGCCCAAACGAATCACGTGTTGCTTCTGCAATTTAATTCTGaacaagaaaaacatcaaaGTACACATTCAAAGACGACACATGTCGGCTAATCCAGACTTGCTGCAAACGAATGGACTAAGCCATACACACATTGCCTCTGGCAACATGGAGGACCTGGTAGCAGAAGGCATTACACTCAAGATGCTTAATGATGCTTGGCAGACGGTCATGAGCAGCCCTTTGGGAGTGATCAAAACACCCATGATCCTCTGGAGCCAGACCACACTGCCACTCCATGTGCCCTGTAACGCCTATCTGAAGTTGGAGAACATGCAGAGGACGgGGTCATTTAAGATTAGAGGTGTAGCAAATCAGTTTGCCCGAAGAGCCAGTGGGGGTAATTTTGTCACATTGTCTGCTGGGAATTATGGGAAGTCCTTTGCCTATGCCTCTAAACACTACGGAACTAAAGGCAAAGTGGTGATGCCTGAAACAGCTCCCATCTCCAGATCTCTGCTAATACAAAGTTTTGGCATCGAGGTTGAACGAGTGCCAACCCAGAGTCTTATGGAAGTTGTCAATCGATGTgttcaaaaggaaaaaatgacttTACTTCATTCCTACAATGATCTGGATCTCATAGCAGGACATGCCAGTCTGGGGTTTGAGATCCTGGAGGTGCTTCCTAATCCTGATGTGGTAGTAGTGTGCTGCGGTGGAGGGGGTTTACTGGCTGGAGTAGCAGCAGTGATTAAGCTTTCAGGTTGTGAGGACACAAGAATTTATGGAGTGGAACCAGAAGGAGCATGCACCATGTACAAAAGCTTCATTGAGAAAAAACCTGTTGGCATGGACAGCAAAAGCATCGCCTCTGGTCTTGCACCACCATCTGCAGGTGCCCTGCCATATGCGATGTGTCAGAAGTATGTGGACGAGATAGTGTTGGTGACTGATGATGAAATCAAGTCTGCCGTTTCTGCTCTCTACAAAGCCGGTCTAGTTGTGGAACCCTCAGGATCCGCTGCCTTTGCTGCCCTCGTTAACAACAGAATACCAGACATTACTGGCAGGACCGTTGTGGTAATCCTGAGTGGAGGGAACATCAGCAAAGAAGAGCTTACCAGCTTCCCggactgatttacacaatacCTCTGTCTTTGATTAGCTTAATGTATTACCTGTTGAGACTTTTAAAGATTTTTGAGGAGTGGATGAAGACTTACCTGACAGAGCCAAATCAACATCATTATTTTTCATACatggaaaacactaaaatcaaATTAGTTGGttgcataataaaataaacaaagtggTTATACCAAATTTCTGagtttatggttttt

Function

NR:

description
mitochondrial tRNA-specific 2-thiouridylase 1

GO: NA

KEGG:

id description
K01754 E4.3.1.19, ilvA, tdcB; threonine dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923836.2 False 2277 mRNA 0.45 11 15554273 15563716
XM_034313341.1 True 2752 mRNA 0.44 11 15554273 15561686

Neighbor

gene id symbol gene type direction distance location
alg10 alg10,LOC108427075 coding downstream 9390 15539057 ~ 15544883 (-)
LOC113532250 NA coding downstream 217340 15325373 ~ 15336933 (-)
LOC113532267 muc19,LOC108280038 coding downstream 290880 15236542 ~ 15263393 (-)
LOC113532243 LOC108279995 coding downstream 317963 15213936 ~ 15236310 (-)
LOC113532053 LOC108279522 coding downstream 415796 15122734 ~ 15138477 (-)
cerk cerk coding upstream 192590 15756306 ~ 15778944 (-)
brd1a brd1 coding upstream 805953 16369669 ~ 16389481 (-)
LOC113531729 pim3 coding upstream 886070 16449786 ~ 16452939 (-)
il17rel il17rel coding upstream 1004979 16568695 ~ 16581436 (-)
LOC113531895 usp15 coding upstream 1058387 16622103 ~ 16647682 (-)
G283081 NA non-coding downstream 32583 15517224 ~ 15521690 (-)
G283022 NA non-coding downstream 164172 15387948 ~ 15390101 (-)
G282999 NA non-coding downstream 200832 15350706 ~ 15353441 (-)
G282950 NA non-coding downstream 283073 15270994 ~ 15271200 (-)
LOC113532334 NA non-coding downstream 341018 15209348 ~ 15213255 (-)
G283218 NA non-coding upstream 190601 15754317 ~ 15754605 (-)
G283307 NA non-coding upstream 478646 16042362 ~ 16042579 (-)
LOC117599449 NA non-coding upstream 515052 16078768 ~ 16082121 (-)
G283503 NA non-coding upstream 675799 16239515 ~ 16239901 (-)
LOC113532372 NA non-coding upstream 731164 16294880 ~ 16296190 (-)
LOC113531972 muc19,LOC108280038 other downstream 370198 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 3801360 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 3893946 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 3966249 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 4294861 11238935 ~ 11259412 (-)
alg12 alg12 other upstream 837205 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 1274819 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 1394796 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 2415047 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 2464018 18027734 ~ 18067585 (-)

Expression


Co-expression Network