slc26a5 (slc26a5)


Basic Information

Item Value
gene id slc26a5
gene name slc26a5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4758823 ~ 4782822 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313205.1
AGGCACGTGGCCTGGCTTCCTGGAGTGAGGCTGCGCTGTGTTAAAGGACATTGGTGTGTTGATCAGTAACCACAGGGAGTTGGAGAGTTTTATTGAGCTCAGCTCACTGCTACATCATTAAAGgaagaggaagctGAGAGAGCAGCGTTGCGTCAGTTGTGTAGCTGGGATCAGTGTCATGCTCCTTCTGCGTTGTTATGGATCATGTAAACGGTGATGTTGAATCCTCCTCTACGCTGGTGTACCGACTCGAGAGACCCGTGTTCAATGAAGAACAAATCAACACCCAGCTGCATAAGAAAGAGCGGCCACTTAAGCCCGTTAGACAGAGACTAGCTGAACGCTGCCGctgTTCATCTGAAAAAGCCAAATCCACCATCTTTGGCCTTCTCCCCATCTTATCATGGCTGCCATCGTATCCAGTGAAGGAGTATCTGTTTGGAGACATAGTTTCAGGTCTCAGCACAGGAGTCATGCAGCTGCCTCAAGgtcTTGCCTATGCGATGTTAGCTGCTGTTCCTCCAGTCTATGGCCTTTATTCATCATTCTATCCTGTTCTTCTCTACACGTTCTTCGGCACTTCCAGACACATATCGATAGGCACGTTTGCGGTGATTAGTCTGATGATTGGAAGCGTGGTGGTGGGAGAAGCGCCGGACTCCATGTTTCCTCTGAACGGGACAAACGGGACGGAGCTGATCGACGTGGCGGCTCGAGACGCCAGAAGAGTGCAAGTGGCCGTGGCTCTGACTGCGCTCATGGGAATTATTCAGctGGTGCTCGGCGTGCTGAGGTTCGGCTTCGTGGCGATTTATCTGACCGAGCCGTTGGTGCGAGGCTTCACCACCGCCGCTGCAGTGCACGTGTTGGTCTCTCAGCTGAAATACCTTTTCGGGGTTAAAACCCAGCGCTTCAGCGGGCCGTTATCTGTCCTCTACAGTCTCATCGCTTTGTTTAAACACATCACCAGCACTAACGTCAGCACACTCATTGTGGGATTGGTGTGTATCGTCTTCCTCTACGGCGTGAAGGACATTAACGAGCGCTTCAAAAAGAAGCTGCCCATCCCCATTCCCGGAGAGATCATCGTGGTGATTGTCTCGACGGGGATTTCCTACGGCATGGCTCTTTCTGAGAACTACCAGGTGGATGTTGTAGGAGAAATCCCTACAGGACTTCAAGCGCCGACTCTTCCAGATTTCAGTCTCTTCCCCAGCCTGATCGCAGACGCTGTAGCTCTGGCTGTGGTGGGCTTCTCCATCGGGATCTCTTTGGCGAAGATATTCGCTCTCAAATATGGCTACAGTGTGGACGGAAACCAGGAGCTGATTGCGCTCGGGTTGTGTAACTCGATCAGTTCCTTTTTCCACACCTTCGCCGTCACCTGCTCGATGTCTCGCAGTTTGGTGCAGGAGAGCACGGGTGGAAAgactcagattgcAGGGCTGTTGGCCTCCTTACTGGTCCTTCTGGTGATTTTGGCAGTGGGGTTTCTGTTCCAGCCTTTACCGcagACCGTGTTAGCTGCGATCATCATGGTCAATCTGCTGGGCATGTTCAAACAGCTCCGAGACATCCCTGCTTTATGGAGAACCAGCAAGATTGAACTGGCGATTTGGGTGGTGGCCTTCGTGGCGTCCGTTCTGCTGGGGTTGGATTACGGACTCCTGGTGGCCATTACATTTGCTATACTCACAGTCGTCTATAGAACACAAAGtcctaAAAGTGTTATTCTCGGGCAAATCTCTGACACTGGACTTTACTACGACACTGAGGAATATGAAGAGGTTACAGAATGTTCAGGGATTAAGATTTTCCACTCCAACACTTCAATCTACTTTGCGAACAGTGACCAGTACGTGAGCTCTCTCAAGGAAAAAACAGGCGTCGATCCTGCACAGCTGCTGGCTGAGAGAAAATCCCAGCGGAAGCAGCTGAAAAAGAGCGAAGACAAGAAGAAGAACTGCCATCACAGCCCCGAGGAGAAGAAGCGAGCAGTAGTTAAACTGGATATGGAGTTAAGCGTGAGTCATGAAGTGGTGGACGAAGCCCAGACCCAAGTGGAATCGCACGTTAACGGACAAATCGCCGAGGCCGAGTCTGACTCTGAGGAGGATCGCTTCCTCCAGCCGCTGTGTCCCGTCCACACTATCATCCTGGACCTAAGCTCTGTCAACTTCATGGACTCTGTAGGAGCCAAAGCTATTAAATCTGTTATTAAGGAGTTCGCagccataaatgtgaaaatcaTGCTTGCTGGATGTAACCGAACTCTACTCTCTGATCTCAGGACTCTGCAGTTCTTCAGCGGTCCTGTGACCCTGGACATCATCTTTCCCACCATTCATGATGCTGTACTGCACTGCCAACACACGAGGGCGCTGTCCTCCTGCCCTGCCAGCCAGTGAGCAcccaggaaacaggaagtgctgtCCTGAAGGGCTGGAATGATGAGTGTTTGAAGTGTGGAATGAGTGAGTTTGGaatataaaagcatttagaAGCAAGGAAGGAACTAGATGTCAAGCACTTCTACGTGTAACACCTCCTGCCTTTAAACTCATCACGTGACTGCGTGAAGATAATGTGAGTAAAACACGCTCTTTATGACCACAGCACTGAAGTTACGCACACAGACGTGGACTCGGATTCATACCTCTTTAGCAGTCTGTTgtatgttggtttttttttttctactgaacACACTCTTTGTTCTTCCCAAAATGTCACATTGTAAAGTTTTAAGGTGTTTTCACACTTCCTCACTCAACCACATGCCTGGATGTtgatggggtttttttgttttgttttttttttttttgctattttctgagattttaaattaa

Function

symbol description
slc26a5 Enables anion transmembrane transporter activity. Acts upstream of or within anion transport and regulation of membrane potential. Located in cytoplasm and plasma membrane. Is expressed in hair cell; inner ear; lagena; utricle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 61. Orthologous to human SLC26A5 (solute carrier family 26 member 5).

NR:

description
PREDICTED: prestin-like

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0019532 oxalate transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0008272 sulfate transport biological_process
GO:0006821 chloride transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019531 oxalate transmembrane transporter activity molecular_function
GO:0015301 anion molecular_function
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG:

id description
K14703 SLC26A5, PRES; solute carrier family 26, member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313205.1 True 2846 mRNA 0.49 19 4758823 4782822

Neighbor

gene id symbol gene type direction distance location
LOC113525244 LOC107556777,LOC108279602,LOC107737851,LOC107710667,LOC106609814 coding upstream 101608 4602027 ~ 4657215 (+)
slc35e3 slc35e3,LOC107710682,LOC107737854 coding upstream 449758 4297802 ~ 4309065 (+)
nup107 nup107,LOC107710680,LOC107590859 coding upstream 463515 4274570 ~ 4295308 (+)
sema3c sema3c,LOC106576426,LOC107694195 coding upstream 717728 3973072 ~ 4041095 (+)
lhfpl3 lhfpl3,LOC107680022 coding upstream 909601 3814881 ~ 3849222 (+)
prdm4 prdm4,LOC107729841,LOC107690481 coding downstream 10059 4792881 ~ 4802717 (+)
LOC117599542 akr1b1,si:dkey-180p18.9,LOC108437938,LOC107587162,LOC107725652 coding downstream 24133 4806955 ~ 4818372 (+)
LOC117599598 akr1b1,si:dkey-180p18.9,LOC108437938,LOC107587162,LOC107725652 coding downstream 62208 4845030 ~ 4851827 (+)
LOC113532120 golt1b,golt1ba,spx,LOC108437943,LOC106532178,LOC106609122 coding downstream 99809 4882631 ~ 4897120 (+)
etnk1 etnk1,LOC107694683,LOC107725541,LOC107659837,LOC107590048 coding downstream 223291 5006113 ~ 5038960 (+)
LOC113523813 LOC108279645 non-coding upstream 167449 4587079 ~ 4591374 (+)
LOC117599587 LOC108279645 non-coding upstream 202352 4555172 ~ 4556471 (+)
LOC117599586 LOC108279645 non-coding upstream 218792 4538820 ~ 4540031 (+)
G276321 LOC108279645 non-coding upstream 248977 4508043 ~ 4509846 (+)
LOC117599588 LOC108279645 non-coding upstream 289853 4467694 ~ 4468970 (+)
G276655 NA non-coding downstream 75 4782897 ~ 4784022 (+)
LOC113536142 akr1b1,si:dkey-180p18.9,LOC108437938,LOC107587162,LOC107725652,LOC107729832 non-coding downstream 53172 4835994 ~ 4840891 (+)
LOC117599543 NA non-coding downstream 60766 4843588 ~ 4869126 (+)
G276668 NA non-coding downstream 97803 4880625 ~ 4880919 (+)
G276719 NA non-coding downstream 221220 5004042 ~ 5004276 (+)
mdm2 mdm2,LOC107577534,LOC107694202,LOC107692244,LOC107590969,LOC107710681,LOC107737846 other upstream 429077 4315172 ~ 4329746 (+)
magi2a LOC108279726 other upstream 488345 4124720 ~ 4270478 (+)
gnai1 gnai1,LOC108279833,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 602739 4058561 ~ 4156084 (+)
ndufb2 ndufb2 other upstream 770163 3913624 ~ 3988660 (+)
LOC117599546 NA other upstream 973196 3782210 ~ 3785627 (+)
LOC117599451 akr1b1,si:dkey-180p18.9,LOC108437938,LOC106523520,LOC107587162,LOC107690495,LOC107729832 other downstream 86702 4869524 ~ 4876792 (+)
stmp1 NA other downstream 95537 4878359 ~ 4880332 (+)
kiss2 NA other downstream 134916 4917738 ~ 4931689 (+)
igf1 igf1,LOC106609475,LOC107659835 other downstream 646088 5428910 ~ 5452517 (+)
ascl1a ascl1,ascl1a,LOC107590149,LOC107664850,LOC107596391,LOC107744950 other downstream 772230 5555052 ~ 5560322 (+)

Expression


Co-expression Network