LOC113547281 (LOC108267848)


Basic Information

Item Value
gene id LOC113547281
gene name LOC108267848
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5431236 ~ 5433720 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947542.2
AAAACAAGGCACCAAAAAACTTTGTTTGCACGTCGGAAGTGAGAAGATGTTTCAGGATCGTGCTCGAAACGGAGGAAAAGTTTCCAGGGAAAGTTGCTGCTGGTGTTGTTTTGATGATCGGATGCAGTTTGAAGGTTGAACATTTGAACTTTTTACGGCGCGCGGGTTCGgggtttggttttgtttttacgCGCAGAACATCACATCTCATCACATCTCATCACATCTCCCCGCGCGCGCTGCACAAACTTCACACCTTTCAACTTTGCAAAAATGGATGGTTTGTTTTATAATGAAGCTCTGGATGGGGTTTTaaaccaccaccatcatcatcaccttcatcatcatcatcttcatcatcatcacggcGAGGCTGGAGGGAACGGATACGAAACCCTGACGCGCAACATGAGCCTGAACCTCGCCGACGCGCCCGACGCGCTCACGCTCACGTCCCCAGACCTCCATTTACTCAAACTCACCTCCCCCGAGCTCGAGCGACTCATCATCCAGTCCTGCAACGGCTTAGCTCCGACAGCCCCGGCTTCCGGTCCGGCGCGCGCTTTCCCCGCTCCAAAACACTCCGCGGACGAGCACGATGCCTTCGCCCTGGCGGAGTTCCAGTGCCACCAGAGGATGTCCAGTAACCCCGAAGATGTGCCACCTGTAGCCACGGCATCGTCTCACGCCTGCGCCGGGTTCGCAGAGCACCTGAACCCCACGTGGGACGCGTACACCGACGCGCCGCCGTGCGCTCCTCCGCAGTTCAGCTGCGCGCCGGCGCTCAAGGACGAGTCGCAGAAAGTCCCCGAGACGCCGCCGCTGTCTCCCATCGACATGGAGGACCAGGAGAGGATCAAAGCCGAGAGGAAGCGCATGAGAAACCGCGTGGCCGCCTCCAAGTGCCGGAAGCGGAAGCTGGAGCGGCTCGCGCGGCTGGAGGAGAGAGTGAGCCGGTTAACGGGGGAGAACGGAGAACTGCGCGGCGCCGCCGAAACGCTCAGAGACCAGGTCGCTCAGCTCAGACACCAGCTCCTGGACCACATCAAGAGCGGCTGCAAACTCCTCAGCCAGCAACTGCAGACTGTCAAAGAGTTTTAAAGGTGCGgttcgtctttttttttttttttttgtcaatacCTGTAAGGATTTCAAAAATACCTTAGAAAGAttgcattcaaaaaaaaaaatgccatgctagttttttcctttcatttcaagCTTccgtttacattttttttttacatttctttctggTCCGGAAATGAGTTCCACCCCCAGCTggatctgccttttttttttttttttcccctataatGCACCTTGCTCTGCACATGTACTGTAGTTTCTCCACAGCATGCGGAGTTAGACTCCAACATTTTCACTCCTAGACATCAGGGGTGTCTAAAATGACATACCGCTCCTTTAATCTTTCAATCAGACTgcactgtggatttttttttattattattataaaatctcGTCTTCCAGTGTCTAAAGGAAGTTGTTTGTGCTAGACTGTTTTATAGACGTATTCGTGGGTGGCGCAGACGGAATCGTTGCCGCCTCACAGGGTCCGGGGTcggatcctgagctcgggtttcCTCCGGCttttccagtttcctcacagaaatatgctggtgactctaaattggccctagatgtatatgtgtgtgtgtatggtgtccAATCCAGGGTGCATTCCCACCTCAGGCCTGGttttcccgggatagactccggattcGCCACAACCCTGACCTCTATTAAGCACttactgaatataaatgaatgaatttcataTTAACATGTGATGTCATgtcatttttccccccacttaTCTTTTTACTAATATAgagttttgcactgtttttagGTTTTCTACAATCTTTGTCCTacattgtacaaaaaaaatgatgtgtaaacatattttatattatcaaTCAACCTGTACAAGGGGTTGTTTTTTGCCCAGGTCACCTCCTGTATGATGATTAAACAGTGACACAATGCTCCATGTACAAAAGCAACTGTTACACACTTTCAgtgcaattaaataaatagagcTTTTTAAAAGGAACGAAAACGTACttgtgtatttaacatttaacatgatTGTGAATAGGCAAATGCTGTAGAATTTTAAGAGGAGCCACTTTTTACGATCATGCATGTGACACACAGGAGAGttaggggaggaaaaaaaggctTGTACATTTCGAAACTGTTAGATTTCTTTAGGTTTGAAAGCAGATTAAATGACACTGTGGGAATGGAGTCAGAATGGTCAATTTTTCATCAATATCAGATATTCATTATCTATAGTATTGATGGGGCATGCGGGTCACAacacaattttaaatgtaaaagaaatgaaaactttATACAATAGATCTGCCATTAAACAAGCATGTAACTATAGTTTCATAtctatacagtactgtgcaaaagtcttaggcacatgcaaagaaatgctgtagagcaaaga

Function

NR:

description
PREDICTED: transcription factor AP-1-like

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0050794 regulation of cellular process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005488 binding molecular_function

KEGG:

id description
K04448 JUN; transcription factor AP-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947542.2 True 2485 mRNA 0.46 1 5431236 5433720

Neighbor

gene id symbol gene type direction distance location
LOC113547286 prdx6,LOC108267850,LOC108414843 coding upstream 21021 5402284 ~ 5410215 (+)
LOC113547263 LOC108261082 coding upstream 124695 5286357 ~ 5306541 (+)
LOC113547265 LOC108268247,LOC108268075,LOC108267254,LOC108261847 coding upstream 178387 5240683 ~ 5252849 (+)
LOC113547266 NA coding upstream 221475 5195675 ~ 5209761 (+)
LOC113547246 LOC108267254,LOC108261847,LOC108268247,LOC108262218,LOC108268074,LOC108268075,LOC108268261 coding upstream 239491 5191076 ~ 5191745 (+)
angptl1b LOC108268093,LOC108440936,LOC105891317 coding downstream 15762 5449482 ~ 5466119 (+)
LOC113547279 tns3,LOC101063620 coding downstream 72981 5506701 ~ 5554666 (+)
LOC113547280 phactr1,LOC108267725 coding downstream 349938 5783658 ~ 5824929 (+)
phlpp1 phlpp1,LOC105899321,LOC107563109,LOC101073770,LOC104947935 coding downstream 396086 5829806 ~ 5901415 (+)
LOC117597064 phlpp1,LOC105899321,LOC106925929,LOC101166990,LOC103479552,LOC102225687,LOC108239649 coding downstream 485923 5919643 ~ 5928583 (+)
G59725 NA non-coding upstream 1614 5429281 ~ 5429622 (+)
G59663 NA non-coding upstream 61780 5301882 ~ 5369456 (+)
LOC113547270 NA non-coding upstream 165222 5264016 ~ 5266014 (+)
G59521 LOC108268222,LOC108268223 non-coding upstream 413434 5011920 ~ 5017802 (+)
G59483 NA non-coding upstream 472922 4958062 ~ 4958314 (+)
G59712 NA non-coding downstream 4124 5437844 ~ 5438721 (+)
G59745 NA non-coding downstream 58481 5492201 ~ 5492461 (+)
G59707 NA non-coding downstream 121230 5554950 ~ 5555698 (+)
G59908 NA non-coding downstream 122871 5556591 ~ 5556859 (+)
G59990 NA non-coding downstream 291726 5725446 ~ 5725668 (+)
LOC113547289 LOC108267851 other upstream 39407 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 241523 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 416423 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 474769 4947137 ~ 4956467 (+)
G59366 ube3c other upstream 722838 4707442 ~ 4708398 (+)
LOC113547291 LOC108268023 other downstream 146076 5579796 ~ 5596225 (+)
trnat-ugu_2 NA other downstream 709812 6143532 ~ 6143802 (+)
LOC117597080 NA other downstream 1161406 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 1250616 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 2622336 8056056 ~ 8062839 (+)

Expression


Co-expression Network