G44463


Basic Information

Item Value
gene id G44463
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11384792 ~ 11385164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52526
gagattcatcagaccaggctacattttttccagtcttcaactgttttggtgagcctgtgcccactgcagcctcagctttctgttcttggctgacagaagtggaacccgacgtggttgtcggctgttgtagcccatcctcctcaagattcgacatgttgtgcattctgagatgcttttctgctcaccacaattgtacagagtggttatctgagttactgtagcctttctgtcagctcgaaccagtctggccattctccgttgattTCTATTATCAACAAGccatttctgtccacagaactgccactcactgaatgttttttctttattgcaccattctgagtaaactctagtgactgttgtgtgtgaaaatgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52526 True 373 lncRNA 0.46 1 11384792 11385164

Neighbor

gene id symbol gene type direction distance location
hs3st1l1 LOC108262815,LOC108426770,LOC107720583,LOC107565063,LOC107750130,LOC107686529,LOC107562391 coding upstream 89812 11254621 ~ 11294980 (+)
LOC113537959 znf518a coding upstream 331541 11044906 ~ 11053251 (+)
cpeb3 cpeb3 coding upstream 410119 10927320 ~ 10974673 (+)
ide ide,LOC107665588 coding upstream 490621 10866397 ~ 10894171 (+)
sfxn4 sfxn4 coding upstream 528655 10849735 ~ 10856137 (+)
trnag-ccc NA coding downstream 206171 11591335 ~ 11591405 (+)
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding downstream 427621 11812785 ~ 11815652 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding downstream 652337 12037501 ~ 12120513 (+)
LOC113544275 LOC108262946,LOC108426851,LOC107708194 coding downstream 748935 12134099 ~ 12143029 (+)
dmac2l atp5s coding downstream 944886 12330050 ~ 12340992 (+)
LOC113545104 NA non-coding upstream 65917 11317785 ~ 11318875 (+)
G44398 NA non-coding upstream 87078 11297492 ~ 11297714 (+)
G44221 NA non-coding upstream 328938 11054078 ~ 11055854 (+)
G44222 NA non-coding upstream 330939 11053575 ~ 11053853 (+)
G44211 NA non-coding upstream 379802 11003160 ~ 11004990 (+)
G44704 NA non-coding downstream 432564 11817728 ~ 11819947 (+)
G44777 NA non-coding downstream 569825 11954989 ~ 11995143 (+)
G44768 NA non-coding downstream 573376 11958540 ~ 11962186 (+)
G44843 NA non-coding downstream 641660 12026824 ~ 12027030 (+)
G44846 NA non-coding downstream 644470 12029634 ~ 12030106 (+)
dntt dntt other upstream 176930 11099593 ~ 11207862 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 776088 10594574 ~ 10608704 (+)
sprn sprn other upstream 826497 10552259 ~ 10558295 (+)
trnak-cuu NA other upstream 2914911 8469624 ~ 8469881 (+)
G42685 NA other upstream 2918480 8465747 ~ 8466312 (+)
LOC113545306 cfap46 other downstream 297700 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 321771 11706935 ~ 11707005 (+)
LOC113544122 NA other downstream 360584 11745748 ~ 11766414 (+)
trnay-gua NA other downstream 1251156 12636320 ~ 12636406 (+)
LOC117596823 NA other downstream 1254153 12639317 ~ 12643304 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G99178 NA unknown CI01000016 null 9814361 ~ 9814955 (-)
rainbow trout (Oncorhynchus mykiss) G101289 NA non-coding NC_048565.1 CM023219.2 92154333 ~ 92154638 (-)