lef1 (lef1,LOC103361279)


Basic Information

Item Value
gene id lef1
gene name lef1,LOC103361279
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7161474 ~ 7204699 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933026.2
tTTACCGAAAGTGTCGGgttgaaatacaaaaaagatataaataaaagctgacgTGCAAGAGCTTCGGGGACGCTTCTGAAAAGTTTAAagtgtagttaaaaaaaaccaaaacaaaacaacgacaacaacaacaacttcgCGTGGTTGTTTGACTGGAGCCGGGCCGGTGAGCTAGTTGGCTAACTATCAAACAAACTTTAAgagtttttctctcttgtttttctctcaagAGGACAATTTCAGAGGAGGAAATACACGAACTACGGAGTCGCTTCGTCTGGGGGGAAGACAGCAAGTTTTCTTTGGGTTCATTCAGAAAGAAATTTTTGTTTAGACCCGAGCTGaacaccagtgtttttttttttcttcttctttttttaaatttcatctgGATTTCACGTTGTCAGTTTAGCCTAGTTATTGTAGAAATAGTGCTGCTTGTGAGAGAGACTCCGCGTTCAGGTTGCAGAGAGGTTCAAATTCGTTCATTTGTACTGAAAAGGATTTGAGGTCCTGCTCCAGAAAGTTCCCGGGAGAGGTGCTGAAACATGCCGCAGCTGGCGGGTGGCGGAGGCGGCGGAGACCCGGAGCTCTGCGCCACCGACGAGATGATCCCGTTCAAGGACGAGGGAGACCCGCAGAAAGAGCAGAGCTTCGCCGAGATCACCAACTCCGAGGAGGAGGGAGACCTGGCCGAGCTCAAGTCCTCTCTGGTCAACGAGAGTGAGACGAGTCCGAACAGCAACAGCCACGACgcaGCTAGACAGTCCCAAATAACCCCAGACTCCTATCATGAAAAACACAGAGAGCATCCGGATGATGGAAAGCTCCAAGATCTGTACAGTAAAGGACATGCCTACTCTGCTTACCCAAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTCTCGCCTCCCATGCCCAGAACGTCAAATAAGGTTCCTGTGGTGCAGCCGTCCCACGCAGTTCACCCCCTCACACCTCTGATCACCTATAGCGATGAGCACTTTGCCCCCGGCCCTCACTCCGCGCACCACCCACAGGACTccaaagGAATGCCTAGGCATCATCCTGGTCCAGATATTCCTAACTTTTACTCACTCTcccctggaggagttggacagATCACCCCACCACTGGGCtgGTTCCCACATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACGGGAATCCCCCACCCTGCCATCGTCAACCCACAAGTCAAACACGAGCCTCCACACGAGACAGACCTGATGCACATGAAGCCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCTCACATCAAGAAGCCACTCAACGCCTTCATGCTTTACATGAAAGAGATGCGTGCCAACGTGGTGGCTGAGTGCACACTGAAGGAGAGCGCTGCCATCAACCAGATTCTAGGCAGAAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCAAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCTAGAGACAATTACggaaagaagaagaaaaggaagagggaGAAGCTCCAGGAATCAGCCACAGGTACAGCCCAGAGAATGAAAACGGCGTACATCTGAGCAATGGAGGAAAACGAACTGCTTTCTCCTCATGCAAAGCGAAGCCAGCAGCTGCGGGGGCCCTTTTGGAGATGGAAGCCTGTTAGATGACTTCTGACCCCTTCAGCGACCTCTTGACTCCCCCCGCTGACCTCTTGGAGGGCTCCAGCTCTCGAGTGCGCTCCTCTGCTGTAGAGACACTGAACTGAAACCACAGACAATCGCTTCTCGCCTAGACCTGCTactctacatacacacagagatacacacttAGCCCTTCACAGATATgagtacacagacacacacacacacacacacacacacaaagttcgTTTGGGGTTTACGTTCGTTTTAGCTTGTTGTGCCCAAAGTCCAAGTTATTGCACTGATAATGTCTTCATCCAAACGCACAAATCACCACACACACGTGCAGAGAGGCAAGAAATCAATCACACACCTTTCCACACCTGTCCCTAAGTTATTTAAGTTATTTGGCACCCCTGTTTTCTGTATGTACAGTTCATCCCCAGCACCATCTCACTTTTCACCCAATGATGTAGCATTTCAGGGCCCGGTTTTCAGGAGCGTTCTCTTCAGATGTCAGACGGATCATTTATTCTCGACTTGCAAACATTCTCTCAAGACTTTTTCATATTTCCACCAGTgggtgcaaaataaaaaaaacaaaaaaggatcAAATTTTTGACTTTTATGGGTTCAAGTTCAAttttgaatgctttttttttttgtattttaaaatattcatttcatcTCTCGGTGTatattttaagtcattttgtttttatctttattttttatatatatactggtatatatatatatacgagAATAAGCTTTGCGACAGGAaagctgttctgtttttcttgcaaaaacGACCTTTCATTTGAGAACTGTAACTAATGATGACCTCCCAGTGCTCAGATGTAAAATAATGCTCAGTATGTgtactttttaatgaaaaatgtctGGATATGTCTCTTTTCTTGGTATTTTTGCAGGCAATGTTAGGACATGCGTGTTCGAGTGGGTACTCAGAGgcctatattttattgttctaaacagacaaatgaagcagatataTATTTACCCCAGCACTTGCCGGTCTCTTTTATTGCGATGTTCCTCTGTTTCCTCTCTATCTGCTAGATAATAGTGTGGTCTTTTTGCCATGTTTATTACATGCAAGCATCTCTGTAACATTTTGATTTTACATTCTATTTTTTAGTATTAttggatacattttttttttttttttttttttttttttttttaaattcattgtcATTTTGAATCACTGTCATCTTGGTTTAGCACTTTGCTTCCAAGTGGTCACATTTGAACTGTGTTTCTAcatgcctttttatttttaaaaaaaaaagacaaaaaaataaatcagcatcTTTGACTGAC
>XM_026933034.2
ATGCCGCAGCTGGCGGGTGGCGGAGGCGGCGGAGACCCGGAGCTCTGCGCCACCGACGAGATGATCCCGTTCAAGGACGAGGGAGACCCGCAGAAAGAGCAGAGCTTCGCCGAGATCACCAACTCCGAGGAGGAGGGAGACCTGGCCGAGCTCAAGTCCTCTCTGGTCAACGAGAGTGAGACGAGTCCGAACAGCAACAGCCACGACgcaGCTAGACAGTCCCAAATAACCCCAGACTCCTATCATGAAAAACACAGAGAGCATCCGGATGATGGAAAGCTCCAAGATCTGTACAGTAAAGGACATGCCTACTCTGCTTACCCAAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTCTCGCCTCCCATGCCCAGAACGTCAAATAAGGTTCCTGTGGTGCAGCCGTCCCACGCAGTTCACCCCCTCACACCTCTGATCACCTATAGCGATGAGCACTTTGCCCCCGGCCCTCACTCCGCGCACCACCCACAGGACTccaaagGAATGCCTAGGCATCATCCTGGTCCAGATATTCCTAACTTTTACTCACTCTcccctggaggagttggacagATCACCCCACCACTGGGCtgGTTCCCACATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACGGGAATCCCCCACCCTGCCATCGTCAACCCACAAGTCAAACACGAGCCTCCACACGAGACAGACCTGATGCACATGAAGCCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCTCACATCAAGAAGCCACTCAACGCCTTCATGCTTTACATGAAAGAGATGCGTGCCAACGTGGTGGCTGAGTGCACACTGAAGGAGAGCGCTGCCATCAACCAGATTCTAGGCAGAAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCAAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCTAGAGACAATTACggaaagaagaagaaaaggaagagggaGAAGCTCCAGGAATCAGCCACAGACTTCCATTTTCTGCAGGTACAGCCCAGAGAATGAAAACGGCGTACATCTGAGCAATGGAGGAAAACGAACTGCTTTCTCCTCATGCAAAGCGAAGCCAGCAGCTGCGGGGGCCCTTTTGGAGATGGAAGCCTGTTAGATGACTTCTGACCCCTTCAGCGACCTCTTGACTCCCCCCGCTGACCTCTTGGAGGGCTCCAGCTCTCGAGTGCGCTCCTCTGCTGTAGAGACACTGAACTGAAACCACAGACAATCGCTTCTCGCCTAGACCTGCTactctacatacacacagagatacacacttAGCCCTTCACAGATATgagtacacagacacacacacacacacacacacacacaaagttcgTTTGGGGTTTACGTTCGTTTTAGCTTGTTGTGCCCAAAGTCCAAGTTATTGCACTGATAATGTCTTCATCCAAACGCACAAATCACCACACACACGTGCAGAGAGGCAAGAAATCAATCACACACCTTTCCACACCTGTCCCTAAGTTATTTAAGTTATTTGGCACCCCTGTTTTCTGTATGTACAGTTCATCCCCAGCACCATCTCACTTTTCACCCAATGATGTAGCATTTCAGGGCCCGGTTTTCAGGAGCGTTCTCTTCAGATGTCAGACGGATCATTTATTCTCGACTTGCAAACATTCTCTCAAGACTTTTTCATATTTCCACCAGTgggtgcaaaataaaaaaaacaaaaaaggatcAAATTTTTGACTTTTATGGGTTCAAGTTCAAttttgaatgctttttttttttgtattttaaaatattcatttcatcTCTCGGTGTatattttaagtcattttgtttttatctttattttttatatatatactggtatatatatatatacgagAATAAGCTTTGCGACAGGAaagctgttctgtttttcttgcaaaaacGACCTTTCATTTGAGAACTGTAACTAATGATGACCTCCCAGTGCTCAGATGTAAAATAATGCTCAGTATGTgtactttttaatgaaaaatgtctGGATATGTCTCTTTTCTTGGTATTTTTGCAGGCAATGTTAGGACATGCGTGTTCGAGTGGGTACTCAGAGgcctatattttattgttctaaacagacaaatgaagcagatataTATTTACCCCAGCACTTGCCGGTCTCTTTTATTGCGATGTTCCTCTGTTTCCTCTCTATCTGCTAGATAATAGTGTGGTCTTTTTGCCATGTTTATTACATGCAAGCATCTCTGTAACATTTTGATTTTACATTCTATTTTTTAGTATTAttggatacattttttttttttttttttttttttttttttttaaattcattgtcATTTTGAATCACTGTCATCTTGGTTTAGCACTTTGCTTCCAAGTGGTCACATTTGAACTGTGTTTCTAcatgcctttttatttttaaaaaaaaaagacaaaaaaataaatcagcatcTTTGACTGAC
>XM_026933042.2
tTTACCGAAAGTGTCGGgttgaaatacaaaaaagatataaataaaagctgacgTGCAAGAGCTTCGGGGACGCTTCTGAAAAGTTTAAagtgtagttaaaaaaaaccaaaacaaaacaacgacaacaacaacaacttcgCGTGGTTGTTTGACTGGAGCCGGGCCGGTGAGCTAGTTGGCTAACTATCAAACAAACTTTAAgagtttttctctcttgtttttctctcaagAGGACAATTTCAGAGGAGGAAATACACGAACTACGGAGTCGCTTCGTCTGGGGGGAAGACAGCAAGTTTTCTTTGGGTTCATTCAGAAAGAAATTTTTGTTTAGACCCGAGCTGaacaccagtgtttttttttttcttcttctttttttaaatttcatctgGATTTCACGTTGTCAGTTTAGCCTAGTTATTGTAGAAATAGTGCTGCTTGTGAGAGAGACTCCGCGTTCAGGTTGCAGAGAGGTTCAAATTCGTTCATTTGTACTGAAAAGGATTTGAGGTCCTGCTCCAGAAAGTTCCCGGGAGAGGTGCTGAAACATGCCGCAGCTGGCGGGTGGCGGAGGCGGCGGAGACCCGGAGCTCTGCGCCACCGACGAGATGATCCCGTTCAAGGACGAGGGAGACCCGCAGAAAGAGCAGAGCTTCGCCGAGATCACCAACTCCGAGGAGGAGGGAGACCTGGCCGAGCTCAAGTCCTCTCTGGTCAACGAGAGTGAGACGAGTCCGAACAGCAACAGCCACGACgcaGCTAGACAGTCCCAAATAACCCCAGACTCCTATCATGAAAAACACAGAGAGCATCCGGATGATGGAAAGCTCCAAGATCTGTACAGTAAAGGACATGCCTACTCTGCTTACCCAAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTCTCGCCTCCCATGCCCAGAACGTCAAATAAGGTTCCTGTGGTGCAGCCGTCCCACGCAGTTCACCCCCTCACACCTCTGATCACCTATAGCGATGAGCACTTTGCCCCCGGCCCTCACTCCGCGCACCACCCACAGGACTccaaagGAATGCCTAGGCATCATCCTGGTCCAGATATTCCTAACTTTTACTCACTCTcccctggaggagttggacagATCACCCCACCACTGGGCtgGTTCCCACATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACGGGAATCCCCCACCCTGCCATCGTCAACCCACAAGTCAAACACGAGCCTCCACACGAGACAGACCTGATGCACATGAAGCCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCTCACATCAAGAAGCCACTCAACGCCTTCATGCTTTACATGAAAGAGATGCGTGCCAACGTGGTGGCTGAGTGCACACTGAAGGAGAGCGCTGCCATCAACCAGATTCTAGGCAGAAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCAAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCTAGAGACAATTACggaaagaagaagaaaaggaagagggaGAAGCTCCAGGAATCAGCCACAGGAGGAAAACGAACTGCTTTCTCCTCATGCAAAGCGAAGCCAGCAGCTGCGGGGGCCCTTTTGGAGATGGAAGCCTGTTAGATGACTTCTGACCCCTTCAGCGACCTCTTGACTCCCCCCGCTGACCTCTTGGAGGGCTCCAGCTCTCGAGTGCGCTCCTCTGCTGTAGAGACACTGAACTGAAACCACAGACAATCGCTTCTCGCCTAGACCTGCTactctacatacacacagagatacacacttAGCCCTTCACAGATATgagtacacagacacacacacacacacacacacacacaaagttcgTTTGGGGTTTACGTTCGTTTTAGCTTGTTGTGCCCAAAGTCCAAGTTATTGCACTGATAATGTCTTCATCCAAACGCACAAATCACCACACACACGTGCAGAGAGGCAAGAAATCAATCACACACCTTTCCACACCTGTCCCTAAGTTATTTAAGTTATTTGGCACCCCTGTTTTCTGTATGTACAGTTCATCCCCAGCACCATCTCACTTTTCACCCAATGATGTAGCATTTCAGGGCCCGGTTTTCAGGAGCGTTCTCTTCAGATGTCAGACGGATCATTTATTCTCGACTTGCAAACATTCTCTCAAGACTTTTTCATATTTCCACCAGTgggtgcaaaataaaaaaaacaaaaaaggatcAAATTTTTGACTTTTATGGGTTCAAGTTCAAttttgaatgctttttttttttgtattttaaaatattcatttcatcTCTCGGTGTatattttaagtcattttgtttttatctttattttttatatatatactggtatatatatatatacgagAATAAGCTTTGCGACAGGAaagctgttctgtttttcttgcaaaaacGACCTTTCATTTGAGAACTGTAACTAATGATGACCTCCCAGTGCTCAGATGTAAAATAATGCTCAGTATGTgtactttttaatgaaaaatgtctGGATATGTCTCTTTTCTTGGTATTTTTGCAGGCAATGTTAGGACATGCGTGTTCGAGTGGGTACTCAGAGgcctatattttattgttctaaacagacaaatgaagcagatataTATTTACCCCAGCACTTGCCGGTCTCTTTTATTGCGATGTTCCTCTGTTTCCTCTCTATCTGCTAGATAATAGTGTGGTCTTTTTGCCATGTTTATTACATGCAAGCATCTCTGTAACATTTTGATTTTACATTCTATTTTTTAGTATTAttggatacattttttttttttttttttttttttttttttttaaattcattgtcATTTTGAATCACTGTCATCTTGGTTTAGCACTTTGCTTCCAAGTGGTCACATTTGAACTGTGTTTCTAcatgcctttttatttttaaaaaaaaaagacaaaaaaataaatcagcatcTTTGACTGAC
>XR_004577908.1
ATGCCGCAGCTGGCGGGTGGCGGAGGCGGCGGAGACCCGGAGCTCTGCGCCACCGACGAGATGATCCCGTTCAAGGACGAGGGAGACCCGCAGAAAGAGCAGAGCTTCGCCGAGATCACCAACTCCGAGGAGGAGGGAGACCTGGCCGAGCTCAAGTCCTCTCTGGTCAACGAGAGTGAGACGAGTCCGAACAGCAACAGCCACGACgcaGCTAGACAGTCCCAAATAACCCCAGACTCCTATCATGAAAAACACAGAGAGCATCCGGATGATGGAAAGCTCCAAGATCTGTACAGTAAAGGACATGCCTACTCTGCTTACCCAAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTCTCGCCTCCCATGCCCAGAACGTCAAATAAGGTTCCTGTGGTGCAGCCGTCCCACGCAGTTCACCCCCTCACACCTCTGATCACCTATAGCGATGAGCACTTTGCCCCCGGCCCTCACTCCGCGCACCACCCACAGGACTccaaagGAATGCCTAGGCATCATCCTGGTCCAGATATTCCTAACTTTTACTCACTCTcccctggaggagttggacagATCACCCCACCACTGGGCtgGTTCCCACATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACGGGAATCCCCCACCCTGCCATCGTCAACCCACAAGTCAAACACGAGCCTCCACACGAGACAGACCTGATGCACATGAAGCCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCTCACATCAAGAAGCCACTCAACGCCTTCATGCTTTACATGAAAGAGATGCGTGCCAACGTGGTGGCTGAGTGCACACTGAAGGAGAGCGCTGCCATCAACCAGATTCTAGGCAGAAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCAAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCTAGAGACAATTACggaaagaagaagaaaaggaagagggaGAAGCTCCAGGAATCAGCCACAGGTACAGCCCAGAGAATGAAAACGGCGTACATCTGAGCAATGaggcTGGTTTTAAAAGAACAGACCCAGATGTGATCTCTCCCTATCCTCCCATCCACCCACATGGCCCACATGTGTAATCCGGAGGAAAACGAACTGCTTTCTCCTCATGCAAAGCGAAGCCAGCAGCTGCGGGGGCCCTTTTGGAGATGGAAGCCTGTTAGATGACTTCTGACCCCTTCAGCGACCTCTTGACTCCCCCCGCTGACCTCTTGGAGGGCTCCAGCTCTCGAGTGCGCTCCTCTGCTGTAGAGACACTGAACTGAAACCACAGACAATCGCTTCTCGCCTAGACCTGCTactctacatacacacagagatacacacttAGCCCTTCACAGATATgagtacacagacacacacacacacacacacacacacaaagttcgTTTGGGGTTTACGTTCGTTTTAGCTTGTTGTGCCCAAAGTCCAAGTTATTGCACTGATAATGTCTTCATCCAAACGCACAAATCACCACACACACGTGCAGAGAGGCAAGAAATCAATCACACACCTTTCCACACCTGTCCCTAAGTTATTTAAGTTATTTGGCACCCCTGTTTTCTGTATGTACAGTTCATCCCCAGCACCATCTCACTTTTCACCCAATGATGTAGCATTTCAGGGCCCGGTTTTCAGGAGCGTTCTCTTCAGATGTCAGACGGATCATTTATTCTCGACTTGCAAACATTCTCTCAAGACTTTTTCATATTTCCACCAGTgggtgcaaaataaaaaaaacaaaaaaggatcAAATTTTTGACTTTTATGGGTTCAAGTTCAAttttgaatgctttttttttttgtattttaaaatattcatttcatcTCTCGGTGTatattttaagtcattttgtttttatctttattttttatatatatactggtatatatatatatacgagAATAAGCTTTGCGACAGGAaagctgttctgtttttcttgcaaaaacGACCTTTCATTTGAGAACTGTAACTAATGATGACCTCCCAGTGCTCAGATGTAAAATAATGCTCAGTATGTgtactttttaatgaaaaatgtctGGATATGTCTCTTTTCTTGGTATTTTTGCAGGCAATGTTAGGACATGCGTGTTCGAGTGGGTACTCAGAGgcctatattttattgttctaaacagacaaatgaagcagatataTATTTACCCCAGCACTTGCCGGTCTCTTTTATTGCGATGTTCCTCTGTTTCCTCTCTATCTGCTAGATAATAGTGTGGTCTTTTTGCCATGTTTATTACATGCAAGCATCTCTGTAACATTTTGATTTTACATTCTATTTTTTAGTATTAttggatacattttttttttttttttttttttttttttttttaaattcattgtcATTTTGAATCACTGTCATCTTGGTTTAGCACTTTGCTTCCAAGTGGTCACATTTGAACTGTGTTTCTAcatgcctttttatttttaaaaaaaaaagacaaaaaaataaatcagcatcTTTGACTGAC
>XR_004577909.1
ATGCCGCAGCTGGCGGGTGGCGGAGGCGGCGGAGACCCGGAGCTCTGCGCCACCGACGAGATGATCCCGTTCAAGGACGAGGGAGACCCGCAGAAAGAGCAGAGCTTCGCCGAGATCACCAACTCCGAGGAGGAGGGAGACCTGGCCGAGCTCAAGTCCTCTCTGGTCAACGAGAGTGAGACGAGTCCGAACAGCAACAGCCACGACgcaGCTAGACAGTCCCAAATAACCCCAGACTCCTATCATGAAAAACACAGAGAGCATCCGGATGATGGAAAGCTCCAAGATCTGTACAGTAAAGGACATGCCTACTCTGCTTACCCAAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTCTCGCCTCCCATGCCCAGAACGTCAAATAAGGTTCCTGTGGTGCAGCCGTCCCACGCAGTTCACCCCCTCACACCTCTGATCACCTATAGCGATGAGCACTTTGCCCCCGGCCCTCACTCCGCGCACCACCCACAGGACTccaaagGAATGCCTAGGCATCATCCTGGTCCAGATATTCCTAACTTTTACTCACTCTcccctggaggagttggacagATCACCCCACCACTGGGCtgGTTCCCACATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACGGGAATCCCCCACCCTGCCATCGTCAACCCACAAGTCAAACACGAGCCTCCACACGAGACAGACCTGATGCACATGAAGCCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCTCACATCAAGAAGCCACTCAACGCCTTCATGCTTTACATGAAAGAGATGCGTGCCAACGTGGTGGCTGAGTGCACACTGAAGGAGAGCGCTGCCATCAACCAGATTCTAGGCAGAAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCAAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCTAGAGACAATTACggaaagaagaagaaaaggaagagggaGAAGCTCCAGGAATCAGCCACAGACTTCCATTTTCTGCAGGTACAGCCCAGAGAATGAAAACGGCGTACATCTGAGCAATGaggcTGGTTTTAAAAGAACAGACCCAGATGTGATCTCTCCCTATCCTCCCATCCACCCACATGGCCCACATGTGTAATCCGGAGGAAAACGAACTGCTTTCTCCTCATGCAAAGCGAAGCCAGCAGCTGCGGGGGCCCTTTTGGAGATGGAAGCCTGTTAGATGACTTCTGACCCCTTCAGCGACCTCTTGACTCCCCCCGCTGACCTCTTGGAGGGCTCCAGCTCTCGAGTGCGCTCCTCTGCTGTAGAGACACTGAACTGAAACCACAGACAATCGCTTCTCGCCTAGACCTGCTactctacatacacacagagatacacacttAGCCCTTCACAGATATgagtacacagacacacacacacacacacacacacacaaagttcgTTTGGGGTTTACGTTCGTTTTAGCTTGTTGTGCCCAAAGTCCAAGTTATTGCACTGATAATGTCTTCATCCAAACGCACAAATCACCACACACACGTGCAGAGAGGCAAGAAATCAATCACACACCTTTCCACACCTGTCCCTAAGTTATTTAAGTTATTTGGCACCCCTGTTTTCTGTATGTACAGTTCATCCCCAGCACCATCTCACTTTTCACCCAATGATGTAGCATTTCAGGGCCCGGTTTTCAGGAGCGTTCTCTTCAGATGTCAGACGGATCATTTATTCTCGACTTGCAAACATTCTCTCAAGACTTTTTCATATTTCCACCAGTgggtgcaaaataaaaaaaacaaaaaaggatcAAATTTTTGACTTTTATGGGTTCAAGTTCAAttttgaatgctttttttttttgtattttaaaatattcatttcatcTCTCGGTGTatattttaagtcattttgtttttatctttattttttatatatatactggtatatatatatatacgagAATAAGCTTTGCGACAGGAaagctgttctgtttttcttgcaaaaacGACCTTTCATTTGAGAACTGTAACTAATGATGACCTCCCAGTGCTCAGATGTAAAATAATGCTCAGTATGTgtactttttaatgaaaaatgtctGGATATGTCTCTTTTCTTGGTATTTTTGCAGGCAATGTTAGGACATGCGTGTTCGAGTGGGTACTCAGAGgcctatattttattgttctaaacagacaaatgaagcagatataTATTTACCCCAGCACTTGCCGGTCTCTTTTATTGCGATGTTCCTCTGTTTCCTCTCTATCTGCTAGATAATAGTGTGGTCTTTTTGCCATGTTTATTACATGCAAGCATCTCTGTAACATTTTGATTTTACATTCTATTTTTTAGTATTAttggatacattttttttttttttttttttttttttttttttaaattcattgtcATTTTGAATCACTGTCATCTTGGTTTAGCACTTTGCTTCCAAGTGGTCACATTTGAACTGTGTTTCTAcatgcctttttatttttaaaaaaaaaagacaaaaaaataaatcagcatcTTTGACTGAC

Function

symbol description
lef1 Enables sequence-specific DNA binding activity. Involved in regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including animal organ development; fin development; and fin regeneration. Predicted to be located in nucleus. Predicted to be part of beta-catenin-TCF complex. Is expressed in several structures, including midbrain hindbrain boundary neural rod; nervous system; neural crest; pleuroperitoneal region; and trunk. Used to study anxiety disorder. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to human LEF1 (lymphoid enhancer binding factor 1).

NR:

description
lymphoid enhancer-binding factor 1 isoform X3

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0048747 muscle fiber development biological_process
GO:0021542 dentate gyrus development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0042100 B cell proliferation biological_process
GO:0061153 trachea gland development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0001756 somitogenesis biological_process
GO:0071864 positive regulation of cell proliferation in bone marrow biological_process
GO:0071866 negative regulation of apoptotic process in bone marrow cell biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0021861 forebrain radial glial cell differentiation biological_process
GO:0021873 forebrain neuroblast division biological_process
GO:0071895 odontoblast differentiation biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0046632 alpha-beta T cell differentiation biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:0032696 negative regulation of interleukin-13 production biological_process
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0032713 negative regulation of interleukin-4 production biological_process
GO:0032714 negative regulation of interleukin-5 production biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0031101 fin regeneration biological_process
GO:0021943 formation of radial glial scaffolds biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0048922 posterior lateral line neuromast deposition biological_process
GO:0060784 regulation of cell proliferation involved in tissue homeostasis biological_process
GO:0021979 hypothalamus cell differentiation biological_process
GO:0030879 mammary gland development biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0048069 eye pigmentation biological_process
GO:0033334 fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0033336 caudal fin development biological_process
GO:0033339 pectoral fin development biological_process
GO:0060561 apoptotic process involved in morphogenesis biological_process
GO:0060325 face morphogenesis biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0070016 armadillo repeat domain binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008013 beta-catenin binding molecular_function
GO:0008301 DNA binding, bending molecular_function
GO:0045295 gamma-catenin binding molecular_function
GO:0030331 estrogen receptor binding molecular_function

KEGG:

id description
K04492 LEF1; lymphoid enhancer-binding factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933026.2 True 3050 mRNA 0.45 11 7161474 7204699
XM_026933034.2 False 2519 mRNA 0.45 11 7161474 7204151
XM_026933042.2 False 3009 mRNA 0.44 10 7161474 7204699
XR_004577908.1 False 2583 misc_RNA 0.46 12 7161474 7204151
XR_004577909.1 False 2600 misc_RNA 0.46 12 7161474 7204151

Neighbor

gene id symbol gene type direction distance location
gstcd gstcd,LOC107095855,LOC106602269 coding downstream 41854 7017457 ~ 7119620 (-)
npnta npnt coding downstream 155440 6942697 ~ 7006034 (-)
aimp1a aimp1 coding downstream 316983 6824909 ~ 6844491 (-)
pkd2 pkd2,LOC107583176,LOC107684281,LOC107706826,LOC107675808 coding downstream 445211 6700324 ~ 6716263 (-)
LOC117596878 LOC108263069 coding downstream 501483 6643933 ~ 6659991 (-)
LOC113538928 LOC108261848,LOC108262968 coding upstream 114400 7319099 ~ 7325006 (-)
LOC113542008 LOC108261848,LOC108262968 coding upstream 120675 7325374 ~ 7338431 (-)
si:ch211-113e8.3 LOC108262753,LOC105903925 coding upstream 157216 7361915 ~ 7384163 (-)
clgn clgn,LOC107674239,LOC107737082,LOC107671330,LOC107556507 coding upstream 425470 7630169 ~ 7646075 (-)
zgc:153642 NA coding upstream 497953 7702652 ~ 7715901 (-)
LOC117596848 NA non-coding downstream 19172 7141099 ~ 7142302 (-)
G42008 NA non-coding downstream 144069 7016765 ~ 7017405 (-)
G41944 NA non-coding downstream 149168 7012093 ~ 7012306 (-)
G41938 NA non-coding downstream 220016 6941240 ~ 6941458 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding downstream 363854 6794579 ~ 6797620 (-)
G42173 NA non-coding upstream 108969 7313668 ~ 7315596 (-)
G42179 NA non-coding upstream 137768 7342467 ~ 7342681 (-)
G42315 NA non-coding upstream 231743 7436442 ~ 7438889 (-)
G42361 NA non-coding upstream 363672 7568371 ~ 7652220 (-)
G42391 NA non-coding upstream 466888 7671587 ~ 7672864 (-)
gab1 gab1 other downstream 1341961 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 1933507 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 2255235 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 2552024 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 4126921 3034482 ~ 3034553 (-)
maml3 maml3 other upstream 234205 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 929942 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 1265287 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 1265659 8470358 ~ 8470429 (-)
LOC113539440 NA other upstream 1278604 8483303 ~ 8492983 (-)

Expression


Co-expression Network