G166289


Basic Information

Item Value
gene id G166289
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15664486 ~ 15846255 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU196899
aatttgaCTGTactatacactgatcagccataacattaaaaccactgacaggtgaagtgaataatattgattatttcattacagtggcacctgtcagggggtgggatatattaggcagcaagtgaacagtcagttctcgaagtcgATGTGtaggaagcaggaaaaatgagcaagtgtaagcatctgagcgactttgacaacagccaaattgtgatggctagacgactgggtcagagcatctttaaaacggcaggtctagtggagtgttcccagtatgcggttagtacctaccaaaagtggtccaaggaaggacaaccggtgacagggtcatgggcacccaaggctcactgatgtgtgtagagagcaaaggctagcccatctggtctgatcccacagaagagctactgtagcacaaattgctgaaaagttaaagctggctatgatagaaaggtgtcagaacacacagtgcatcacagcttgctgcgtatgggactgtgtagctgcagaccagtctgagtgcccatgctgacccctgtccaccgctgaaagtgcctacaatgggcatgtgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196899 True 570 lncRNA 0.48 2 15664486 15846255

Neighbor

gene id symbol gene type direction distance location
peli2 peli2,LOC108270353,LOC103028664,LOC108435764,LOC107586838,LOC107664501,LOC107668538,LOC107561697 coding downstream 39303 15608765 ~ 15625183 (-)
tmem260 tmem260 coding downstream 122360 15513379 ~ 15542126 (-)
ap5m1 ap5m1 coding downstream 252733 15407340 ~ 15411753 (-)
naa30 naa30,LOC108270341,LOC108258186 coding downstream 259790 15398852 ~ 15404696 (-)
tmem63c tmem63c,LOC107732232 coding downstream 369818 15263327 ~ 15294668 (-)
si:dkey-21a6.5 NA coding upstream 1782 15848037 ~ 15855183 (-)
nt5c1ab LOC108269929,LOC108425685,LOC106610886 coding upstream 12475 15858730 ~ 15863628 (-)
zfyve28 zfyve28 coding upstream 17865 15864120 ~ 15878344 (-)
rtkn2a LOC108269925 coding upstream 37143 15883398 ~ 15889538 (-)
egr2a egr2a,LOC108269483 coding upstream 60102 15906357 ~ 15914710 (-)
G166286 NA non-coding downstream 56964 15605903 ~ 15607522 (-)
LOC113539013 NA non-coding downstream 173478 15481130 ~ 15491008 (-)
G165951 NA non-coding downstream 418577 15245584 ~ 15245909 (-)
G165950 fam161b non-coding downstream 419023 15244866 ~ 15245463 (-)
G165949 fam161b non-coding downstream 419988 15244285 ~ 15244498 (-)
G166319 NA non-coding upstream 49412 15895667 ~ 15896570 (-)
G166380 NA non-coding upstream 86902 15933157 ~ 15933437 (-)
G166390 NA non-coding upstream 153964 16000219 ~ 16000512 (-)
G166484 NA non-coding upstream 420974 16267229 ~ 16267515 (-)
G166633 NA non-coding upstream 598586 16444841 ~ 16446005 (-)
ktn1 ktn1,LOC107668535 other downstream 991 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 342435 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 547122 15107120 ~ 15117364 (-)
nenf nenf other downstream 582281 15079696 ~ 15082205 (-)
nkx2.2a nkx2-2,nkx2.2a,LOC107558480,LOC107707659,LOC107737280,LOC108435751 other downstream 891605 14727133 ~ 14772881 (-)
mideasb elmsan1 other upstream 1027024 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 1320613 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 1769483 17615738 ~ 17624534 (-)
G167566 apob other upstream 2459488 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 2529148 18375403 ~ 18382455 (-)

Expression


Co-expression Network