LOC113529462 (LOC108269960)


Basic Information

Item Value
gene id LOC113529462
gene name LOC108269960
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20298511 ~ 20301554 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU199899
AACCGTCAGACCTGACATTGGACCTTAGCACTCACAAGCTAGAAAGGACTATGAACTGTGGAGAGTCTCTGCTGGCCTGAATTTCCAGCCAGAAATATAAACCTGCTTTAATGAAAAGATTTAGATCAAGaataAAGTGTTCCATGATGTGCCATTCATAAAGAACCCTTACATCCATTTACATCGACtttcaaaaaggaacccatATATTTTACGTTTGACCAAATTCAGTGGGATGCCCCTAAGGACAACATTACAAGACCTGGGGCCCTCTATATTGGATGACGTACTGCAGGTTATGGACAAACTCCAACAGTAAAGGAAAAACTGTGCCATGTGATGCCTTCTATATTAATGGAAAACCAATGTATGGACTTCCTGACTTCACTGGAAGAATACGAGATACTGAGTGGTGAGGACATCTCTAATTTGgacaataataaacaaagcttgtggttgactttgactttgtgGTTTAAATAGAATTTGACCAGTGTCAGGATAATCAAGATTATTAacatatgttaaatatattaaacagaGGACCGATAACataatatttaagatttaatattaatatttcagttcCTCTTGCACTGAAAATTATAAATTGTATTGTGTGTTGTGAAAATACACTGATATTTAATGGTTTTAAAACTTTCAAACTTTCAGGAGGCTGACACAATATTTCAAATACACATGTTCTAGAATACTGCGACTCATAAAGCAACTTATcacttatatattttaattattattatatataattattatattacaattcaattataacaaaaaaattacattcaaaCTATAATTTTAAGAATGCTgaatgtattgtttttattaattaggatgtttattgatgtgttatgaaaaaaattcttttgttaaatcttttgttatttaatgtttcagtattttagaGGAGTAGTCCCAGTAATCCCACCAAAGTCAATAGCACAGACTGCACATAAAATCTCTTGTCAATGGG
>XM_026918654.2
TCAGACCTGACATTGGACCTTAGCACTCACAAGCTAGAAAGGACTATGAACTGTGGAGAGTCTCTGCTGGCCTGAATTTCCAGCCAGAAATATAAACCTGCTTTAATGAAAAGATTTAGATCAAGaataAAGTGTTCCATGATGTGCCATTCATAAAGAACCCTTACATCCATTTACATCGACtttcaaaaaggaacccatATATTTTACGTTTGACCAAATTCAGTGGGATGCCCCTAAGGACAACATTACAAGGTAAGCCTCCTTCAGGGAGGTGGCCAAGGAGATCATCAAAGCGGAAAGATCTCTCCGTCAACATGATCAGTCTTCCACTGGCAGATTTCCGACACCTCACCCACGTTGACTCGGATGCAAACAGGGACAGCTTTGGAGACCTCTCTTTCCTGAAGCAGGGCCACAGGTTGTTGCTGCAAAGCTCTCAGAGTGAGCAGAACCTGCTCCAGGCCTGTCTGGCCCCTCCAAAGCCTCCTCGCCTCAACCTGAATGAAACAGAGTTGGGCCAGGACAGTGATGATTGGGAGCTCCAATACCAGCCTTCAGCTGAAAGACGCAAAAAATGTAACTCTCTACCACTTCTAGACACTGAGGACGTGGAGGAAGAAGTTTACGAACTGCATCAAGAAGAAGTCTCTATCAGTAAAAGCCCTGGCTGGGGGAGCCTCAGCTCAGGTAGGGATTCAACACAGACTGGTCCTGAGGAATTCCAGCCAGATGAAATTGACACAACTTTCACTTTTAATCTAGACCTGGGGCCCTCTATATTGGATGACGTACTGCAGGTTATGGACAAACTCCAACAGTAAAGGAAAAACTGTGCCATGTGATGCCTTCTATATTAATGGAAAACCAATGTATGGACTTCCTGACTTCACTGGAAGAATACGAGATACTGAGTGGTGAGGACATCTCTAATTTGgacaataataaacaaagcttgtggttgactttgactttgtgGTTTAAATAGAATTTGACCAGTGTCAGGATAATCAAGATTATTAacatatgttaaatatattaaacagaGGACCGATAACataatatttaagatttaatattaatatttcagttcCTCTTGCACTGAAAATTATAAATTGTATTGTGTGTTGTGAAAATACACTGATATTTAATGGTTTTAAAACTTTCAAACTTTCAGGAGGCTGACACAATATTTCAAATACACATGTTCTAGAATACTGCGACTCATAAAGCAACTTATcacttatatattttaattattattatatataattattatattacaattcaattataacaaaaaaattacattcaaaCTATAATTTTAAGAATGCTgaatgtattgtttttattaattaggatgtttattgatgtgttatgaaaaaaattcttttgttaaatcttttgttatttaatgtttcagtattttagaGGAGTAGTCCCAGTAATCCCACCAAAGTCAATAGCACAGACTGCACATAAAATCTCTTGTCAATGGGAAAGAATTAAAGCTGTATCACCTAAACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199899 False 994 lncRNA 0.32 3 20298541 20301554
XM_026918654.2 True 1529 mRNA 0.38 2 20298511 20301549

Neighbor

gene id symbol gene type direction distance location
inf2 inf2,LOC107745357,LOC107678755 coding downstream 42636 20219874 ~ 20255875 (-)
adss1 adssl1,LOC107571830,LOC107703625,LOC107678758 coding downstream 85549 20202119 ~ 20212962 (-)
siva1 siva1 coding downstream 124433 20169130 ~ 20174078 (-)
akt1 akt1,LOC107716055,LOC107703621 coding downstream 172172 20065720 ~ 20126339 (-)
cep170b cep170b coding downstream 239509 20027293 ~ 20059002 (-)
LOC113530110 cyp1c1,cyp1c3,LOC103357016,LOC107745367 coding upstream 67580 20369134 ~ 20372103 (-)
LOC113530102 thbs1,LOC108270370,LOC107719693,LOC107568499,LOC107687209,LOC107743901,LOC107678760 coding upstream 142641 20444195 ~ 20453800 (-)
acp7 acp7,papl coding upstream 199595 20501149 ~ 20521426 (-)
chrm5a LOC108269673,LOC108430663 coding upstream 243212 20544766 ~ 20546294 (-)
LOC113530100 LOC108270491,LOC108430665,LOC106610839,LOC107678700,LOC106587081,LOC102312465,LOC105908186 coding upstream 268329 20569883 ~ 20728827 (-)
G168759 NA non-coding downstream 147208 20150293 ~ 20151303 (-)
G168758 NA non-coding downstream 148609 20149490 ~ 20149902 (-)
G168756 zbtb42,LOC106610857,LOC106582697 non-coding downstream 149775 20145267 ~ 20148736 (-)
G168750 NA non-coding downstream 191653 20106213 ~ 20106858 (-)
G168747 NA non-coding downstream 197939 20099127 ~ 20100572 (-)
G168908 NA non-coding upstream 141443 20442997 ~ 20443772 (-)
G169104 NA non-coding upstream 237308 20538862 ~ 20540283 (-)
G169109 NA non-coding upstream 246091 20547645 ~ 20547877 (-)
G169118 NA non-coding upstream 262601 20564155 ~ 20564828 (-)
G169126 NA non-coding upstream 271853 20573407 ~ 20573613 (-)
srp14 srp14,LOC106610862 other downstream 279794 20013579 ~ 20018717 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 688733 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 703297 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 709609 19586924 ~ 19588902 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 1331898 18961708 ~ 18966613 (-)
gchfr gchfr,LOC106583112 other upstream 21210 20322764 ~ 20330746 (-)
G169119 NA other upstream 263375 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 512135 20813689 ~ 20817439 (-)
bmf1 bmf other upstream 786749 21088303 ~ 21119625 (-)
G170023 NA other upstream 1814011 22115565 ~ 22115876 (-)

Expression


Co-expression Network