LOC117598779


Basic Information

Item Value
gene id LOC117598779
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21742151 ~ 21742595 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598779
catgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttacgagCTACGCTACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaCACACTGATTGTGATGGGGATGCAGCTTAcaatgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaacAGgctcacagtga

Function

GO: NA

KEGG:

id description
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598779 True 352 V_segment 0.49 2 21742151 21742595

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 48517 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 50575 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 57506 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 65344 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 68821 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 810129 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 887286 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 918965 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 935569 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 963959 22706554 ~ 22729853 (-)
G215168 NA non-coding downstream 96257 21645119 ~ 21645894 (-)
G214980 NA non-coding downstream 107287 21634658 ~ 21634864 (-)
G214978 rest,LOC106604639 non-coding downstream 110284 21628129 ~ 21631867 (-)
G214977 NA non-coding downstream 120230 21620678 ~ 21621921 (-)
G214976 NA non-coding downstream 125319 21616602 ~ 21616832 (-)
G215217 NA non-coding upstream 279491 22022086 ~ 22078908 (-)
G215171 NA non-coding upstream 282888 22025483 ~ 22082843 (-)
G215221 NA non-coding upstream 337567 22080162 ~ 22136007 (-)
G215224 NA non-coding upstream 378861 22121456 ~ 22133365 (-)
G215172 NA non-coding upstream 383077 22125672 ~ 22140140 (-)
LOC117598971 NA other downstream 32728 21708653 ~ 21709423 (-)
G215192 NA other downstream 35099 21706490 ~ 21707052 (-)
LOC117598882 NA other downstream 38082 21702581 ~ 21704069 (-)
LOC113546939 NA other downstream 41647 21699990 ~ 21700504 (-)
LOC117598880 NA other downstream 42357 21699292 ~ 21699794 (-)
LOC117598780 NA other upstream 1116 21743711 ~ 21744191 (-)
LOC117598955 NA other upstream 1792 21744387 ~ 21744877 (-)
LOC117598901 NA other upstream 4608 21747203 ~ 21748348 (-)
LOC117598867 NA other upstream 10523 21753118 ~ 21753753 (-)
LOC117598781 NA other upstream 13375 21755970 ~ 21756527 (-)

Expression


Co-expression Network