LOC117598884 (LOC108275153)


Basic Information

Item Value
gene id LOC117598884
gene name LOC108275153
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22222397 ~ 22222851 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598884
caccatgatctctacatccctactgctgctgctgctggcagccgtacactgtgttcactgtgttgagctgatccagaccggatccacagtattaacccctggtcagtcaatgactctgacctgtaAAGTATCTGGATATTCATTAACTGATAGCAGCTACTGTACACACTGGatacgacaacctgcaggaaaagctctggagtgggtCGGACGTATATGTGGTGGCGGTAGCATTAACTAcaatgagaaactgaaaagcaggtttcagatttccagagacacgtccagcagcacagtaacattaacagggcagaagatgcagactgaagacacagctgtgtattactgcgctcgtgaaccacagtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598884 True 367 V_segment 0.48 2 22222397 22222851

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 528763 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 530821 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 537752 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 545590 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 549067 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 329873 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 407030 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 438709 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 455313 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 483703 22706554 ~ 22729853 (-)
G215228 NA non-coding downstream 24985 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 82257 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 86390 22080162 ~ 22136007 (-)
G215224 NA non-coding downstream 89032 22121456 ~ 22133365 (-)
G215171 NA non-coding downstream 139554 22025483 ~ 22082843 (-)
G215249 NA non-coding upstream 167505 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 223271 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 252170 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 255125 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 510878 22733729 ~ 22734095 (-)
LOC117598811 NA other downstream 3333 22217308 ~ 22219064 (-)
G215211 NA other downstream 5327 21957320 ~ 22217070 (-)
LOC113546935 NA other downstream 5363 22215742 ~ 22217034 (-)
LOC117598898 NA other downstream 7053 22214544 ~ 22215344 (-)
G215183 NA other downstream 10499 21815670 ~ 22211898 (-)
G215184 NA other upstream 2790 22225641 ~ 22257250 (-)
LOC117598812 NA other upstream 4590 22227441 ~ 22227947 (-)
LOC117598926 NA other upstream 7307 22230158 ~ 22230602 (-)
LOC117598907 NA other upstream 9121 22231972 ~ 22232468 (-)
LOC117598902 NA other upstream 17646 22240497 ~ 22240949 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location