LOC117598907


Basic Information

Item Value
gene id LOC117598907
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22231972 ~ 22232468 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598907
CGAGTCTCATCAGCACTCACCATGAAGATCCCACTCTCCTTATTCCTGCTACTAATCAGCCTCATCAGTATTCAGTGTCAAAGTCTTGAGTCTATTCCCAGTGGTTCAGTGGTGAAAAAACCTGGAGAAACTCTGAGTCTCTCCTGTAAAGGATCTGGGTTTAACTTTGGTGGCTATGGAATGAACTGGATCAGACAACAAGCTGGAAAAGCACTAGAATGGATTGGGGCTATCTGGTATGATTCCAGTAAAACTCAATATGCCAAACACATCGAGGGACGTCTGGAAATTACCAGAGACAACTCCAAAAACATGGTGTATCTGCAGCTGACTGGTTTGAGTGCACAGGACTCtgctgtgtattactgtgcAAAATAACACAGTGGTACAAACATGTTAATCAGCTGTACAAAA

Function

GO:

id name namespace
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko00730 Thiamine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598907 True 414 V_segment 0.43 2 22231972 22232468

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 538338 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 540396 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 547327 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 555165 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 558642 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 320256 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 397413 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 429092 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 445696 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 474086 22706554 ~ 22729853 (-)
G215228 NA non-coding downstream 34560 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 91832 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 95965 22080162 ~ 22136007 (-)
G215224 NA non-coding downstream 98607 22121456 ~ 22133365 (-)
G215171 NA non-coding downstream 149129 22025483 ~ 22082843 (-)
G215249 NA non-coding upstream 157888 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 213654 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 242553 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 245508 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 501261 22733729 ~ 22734095 (-)
LOC117598926 NA other downstream 1370 22230158 ~ 22230602 (-)
LOC117598812 NA other downstream 4025 22227441 ~ 22227947 (-)
LOC117598884 LOC108275153 other downstream 9121 22222397 ~ 22222851 (-)
LOC117598811 NA other downstream 12908 22217308 ~ 22219064 (-)
G215211 NA other downstream 14902 21957320 ~ 22217070 (-)
LOC117598902 NA other upstream 8029 22240497 ~ 22240949 (-)
LOC117598897 NA other upstream 11596 22244064 ~ 22244586 (-)
LOC117598930 NA other upstream 14304 22246772 ~ 22247215 (-)
LOC117598908 NA other upstream 17622 22250090 ~ 22250613 (-)
G215235 NA other upstream 18463 22250931 ~ 22272210 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026563 ighv6-1 coding NC_007114.7 CM002887.2 34095514 ~ 34103365 (-)
eurasian perch (Perca fluviatilis) G153409 NA unknown NC_053126.1 CM020923.1 9768638 ~ 9769251 (+)
mexican tetra (Astyanax mexicanus) LOC111190670 NA non-coding NW_019172687.1 APWO02002285.1 35137 ~ 35596 (-)