Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598919 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21672822 ~ 21673330 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598919 | True | 395 | V_segment | 0.45 | 2 | 21672822 | 21673330 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| b4galt1l | b4galt1,LOC108277608,LOC106602599,LOC106602598 | coding | downstream | 58947 | 21586098 ~ 21613875 (-) |
| srp72 | srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 | coding | downstream | 292606 | 21368754 ~ 21380216 (-) |
| arl9 | arl9 | coding | downstream | 305710 | 21360562 ~ 21367112 (-) |
| ints10 | ints10,LOC105894096,LOC105894103 | coding | downstream | 470953 | 21184962 ~ 21201869 (-) |
| klb | klb | coding | downstream | 498290 | 21165851 ~ 21174532 (-) |
| LOC117598868 | NA | coding | upstream | 2308 | 21675638 ~ 21676807 (-) |
| LOC117598954 | NA | coding | upstream | 10694 | 21684024 ~ 21684645 (-) |
| LOC117598776 | NA | coding | upstream | 12367 | 21685697 ~ 21691576 (-) |
| LOC117598896 | NA | coding | upstream | 19853 | 21693183 ~ 21693634 (-) |
| topaz1 | topaz1 | coding | upstream | 879394 | 22552724 ~ 22582102 (-) |
| G215168 | NA | non-coding | downstream | 26928 | 21645119 ~ 21645894 (-) |
| G214980 | NA | non-coding | downstream | 37958 | 21634658 ~ 21634864 (-) |
| G214978 | rest,LOC106604639 | non-coding | downstream | 40955 | 21628129 ~ 21631867 (-) |
| G214977 | NA | non-coding | downstream | 50901 | 21620678 ~ 21621921 (-) |
| G214976 | NA | non-coding | downstream | 55990 | 21616602 ~ 21616832 (-) |
| G215194 | NA | non-coding | upstream | 50141 | 21723471 ~ 22134451 (-) |
| G215217 | NA | non-coding | upstream | 348756 | 22022086 ~ 22078908 (-) |
| G215171 | NA | non-coding | upstream | 352153 | 22025483 ~ 22082843 (-) |
| G215221 | NA | non-coding | upstream | 406832 | 22080162 ~ 22136007 (-) |
| G215224 | NA | non-coding | upstream | 448126 | 22121456 ~ 22133365 (-) |
| LOC113528016 | thegl | other | downstream | 313632 | 21352281 ~ 21359190 (-) |
| slc16a2 | LOC108279893,LOC107596364 | other | downstream | 400315 | 21236802 ~ 21272507 (-) |
| fgf2 | fgf2,LOC107717315 | other | downstream | 644741 | 21014439 ~ 21028081 (-) |
| spry1 | spry1 | other | downstream | 767551 | 20900057 ~ 20905271 (-) |
| hs3st1 | hs3st1 | other | downstream | 1459193 | 20205339 ~ 20213629 (-) |
| G215187 | NA | other | upstream | 2941 | 21676271 ~ 22269092 (-) |
| G215188 | NA | other | upstream | 12374 | 21685704 ~ 21970414 (-) |
| LOC117598877 | NA | other | upstream | 21542 | 21694872 ~ 21695359 (-) |
| G215182 | LOC108275153 | other | upstream | 23330 | 21696660 ~ 22285703 (-) |
| LOC117598964 | NA | other | upstream | 24413 | 21697743 ~ 21698174 (-) |
