LOC117598926


Basic Information

Item Value
gene id LOC117598926
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22230158 ~ 22230602 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598926
catgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcTCCTGCAAGGTCTCATATTCACTTACGAGCTATAGTACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaCACATCAATAGCTATGGGAGTACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcagactgaagacacagctgtgtattactgcgcaagagactcacagtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598926 True 352 V_segment 0.47 2 22230158 22230602

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 536524 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 538582 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 545513 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 553351 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 556828 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 322122 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 399279 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 430958 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 447562 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 475952 22706554 ~ 22729853 (-)
G215228 NA non-coding downstream 32746 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 90018 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 94151 22080162 ~ 22136007 (-)
G215224 NA non-coding downstream 96793 22121456 ~ 22133365 (-)
G215171 NA non-coding downstream 147315 22025483 ~ 22082843 (-)
G215249 NA non-coding upstream 159754 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 215520 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 244419 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 247374 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 503127 22733729 ~ 22734095 (-)
LOC117598812 NA other downstream 2211 22227441 ~ 22227947 (-)
LOC117598884 LOC108275153 other downstream 7307 22222397 ~ 22222851 (-)
LOC117598811 NA other downstream 11094 22217308 ~ 22219064 (-)
G215211 NA other downstream 13088 21957320 ~ 22217070 (-)
LOC113546935 NA other downstream 13124 22215742 ~ 22217034 (-)
LOC117598907 NA other upstream 1370 22231972 ~ 22232468 (-)
LOC117598902 NA other upstream 9895 22240497 ~ 22240949 (-)
LOC117598897 NA other upstream 13462 22244064 ~ 22244586 (-)
LOC117598930 NA other upstream 16170 22246772 ~ 22247215 (-)
LOC117598908 NA other upstream 19488 22250090 ~ 22250613 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location