G204679


Basic Information

Item Value
gene id G204679
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3399769 ~ 3403347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU242422
CTGCACATCTGCTGATGCAACACTGGTTTTACATGAACATGAGAATCTGCTGTGTTTAATCCAAACTGCATCTTAAAACTCAACCCATCTCTCACCGACCGTGTGATTTAAACACCTGATCAACAGCAAAAAGGCAAACAGACAAACCTGTAACGAGTCTTTAGTGATTAACGggaaatgtaaacatgtaacTATGTCCTTGATCTTTCTGTCTATCGATCCATCCATGCATCATAACTCCTATATTAGTAGAGAAAACAGCACGTACGAGCTCCTCTTTACATTTCtaattttaacataaaacaCTTGTAGCCTTCACTGAAGTATTTAAATCATAACTACACTACAGAGATACCACATACAGGAAACGTTTCGATTTTGGTCCATTTCTTCAAATTTACATCCCGGACAaactgcaagaaagaaaaacaggaaggctCTGGACTCATTTACTGGAACATTTTATAAAGAAACGTCCCAAAAATCCTAGCGCTCTAACAAGGCTTCTCATTATCGCTTACTCCAGCTTTAAAACGGAGAAATGTCTGCGTTGTCCTACAGAGCTACtgaactctgattggtcagaaggtgaatgattttctataacagcatctctcgTTCTAATActctatcgtttctatagtaacagctcatacacagaaACTTGTGCAACAGACAACAGACTTTGGTGCTGCAcatgaactgattaaaaatcGTAAGCAATCGTTGAAACGGGGGagttttctttaacatttatggaaggagtctttttttttttgtcttattaacttcgagagaggaAATATCTTGTTTTGTcgacgtttcacaacattaaacgagacatcattctttaataaataaaaaaaatcgtcattgttggtaaattgctgtggtgtaagaggaataaaacacttaaagcACAACAGCgcacccaagtgttttatttcttatatagaCTCAGATTAACCCTCTGTTGTAAACGCTCTCTCTTCTAGCGACTCGTGTCTCTCTATAATGCAGCATCTGTTCTCCGTCTCAATTTTCCCCGAAGAACGCAACTCGAAACTAATCCTAAGGCACAGGTTCGTGAAATCACAGCAAagacacaaacactaacatttcACATCAGCAAAAGCTCTTTAAAATAGACAGTTAGTGTCACATCAGCCACGTAAAAGCCATTACTGTACATGCTCAGGAGCAAAAGATTAAATCTAACATGTAAAGGGTTCTATGGTTCATCCCTAACAGAACCCTGATCCTCTGTTAAGCAAGTGAGAACCTAACAATCATCAACGCTTTGTACATGTGTGCAATATGACAACgtgataaatttatacaatcaTTTACCATTTCTATATTTTGAGCGCATCCTGAGTCTCCTTAGTGCTTTTATACCACTGACGTTGTTGCTGTAAcgacaaaaatgtgtttttctttcccctcatgttacattttaagcaatttatttctaaaaatttttttcttaaccTCCCACTCATAACATGAAGCGTCTGTTCCAACTTGTTATCCAgtgacaaaattaaaatatcttgaCGTCATGTTCGCTAACGTACAGGAACGTGGCTCGGCTACGAGTGCCCCAAAAAGGGCAGGTGTGTCACTGACGCAAAGCAACAACATTTCGAAACGTTATTCCTAACCTGCTAAAGCTAAAGCTCCTTGCACCAAACCTCTAATTGTTCGTTAGAAGACATTTTGCACACAAACCCATATGGCAATATTGCAGTCCGTACGTTTGAGctgcactgcacagtttagtgtttcctgctctctctctctctctctctcacccacacacacctgagtcaTCTCATTTGCATGAAGATGTGTTCACCTACAAGGTAACAGCTAAACGAAGTGTATAGCTTTGTGCGGAGTTGTTCGTTGTCTCTGATTCGATAAAATGGACACACCGACGCCATCTTAGAGCGCCATCTTAGAGCGCCACCTTAGAGCGCCACCTCAGAGCGCCATCTTAGAGCGCCACCTTAGAGCGCCACCTCAGAGCGCCACCTCAGAGCGCCACCTCAGAACCAAATTATTTTCATCCTCAGTCACTCCATATGCCTCAGACTCAGTTAGGACTTTGAACAAGGAAATATTGATTAAAATTATAACCTAGCTGTAATTTCTTTCCAAAACGTAACATCTTAAAAAGCTACAACTTAGCCAGGTTAAACATATGGCTATAATCTCCCCTTGCTTATCAGGTAATTccgccttgtagctccagtgcagaattaaagaagcaaactacACACACCAGACATGTCTCACGTGAGAGACTGCATTCAGGCTAAAggggaaattatttatatttcttaaatgtattaaatctgAGGCATTAGAATAACATTTCCTACTGATAATCTCATTTCTTACTTCCATCTTTGACCAATTTTCACCCTATTAGGTCGTGAAACAGATCGTAGAGCAGAAAACCACCCAAACTGTGCAGTGCTAATAtccatttcagacattttcaatgtaaaaacagtgaaaaatagATATGTATATATCAGGCTGTAAATATagacaaagttaaaaaaaaaaataaaaaaaataataaaataaaatagagagGGATTAACCCTCAGTTAACAGTAGTAATAAAGCAGAGACGAGCTCACACACTCCAAATGCAAGAGTGTTAAACCCTTAGTCAGCCGGAGGCATGCATAGAAGAGTCCagaacaatcacacacacgatggagagagagagagagagagagagagagagagagagagaaaagcagagagagagagaaagagagaaagagagagagagagagagagagagagagagaaagatgacaGCGAAGATCTCAACAAAGAACAGACTAATTCTTGCTTTGGTGTAAAGTTACAGTTTCACCTCTGACACTCAaaactccttccgtaaatgtttaataaacgtctcctcacagaaaacgtcaccatatcaacgattacacgcATTTTTAGTCCGTTTATGTAGCGCATCTGGAGCGCATCAGATATTAATAAACATCTGCGGGAGATTCTGAAGTGACGTGTTAGGAAAACATCAGCTGATGGAATATCTTACAGAAGAACGTGTTCCAGAAACATGTAGAATATTCGTTTGTATACAGCAGGCCTGACTTATCACGCTGGATTTATACATAAATCCAAGAAATTTGATATTCGTGAAAATCCGTGTAAATTCAGGAAAAATGTCCGTATCCtactcctgagtgtgtgtggatttacGCTTAGGAACACTAACTAACgtaaacctcgacttgatcgacttcaaatcacATAATTCGCATgtgttactgcacttttatatctggaatatactgttgagtttaaagtgcttatttttattatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242422 True 3379 lncRNA 0.39 3 3399769 3403347

Neighbor

gene id symbol gene type direction distance location
LOC113528556 LOC108277488,LOC108437999,LOC107721491,LOC107720004,LOC107590377,LOC107688123,LOC107601225,LOC107654455 coding upstream 46917 3317323 ~ 3352852 (+)
LOC117598751 tlr-5,LOC108275971,LOC108275978 coding upstream 102173 3290562 ~ 3297596 (+)
LOC117598988 tlr-5,LOC108275978,LOC108275971 coding upstream 110328 3276048 ~ 3289441 (+)
mylpfa mylpf,mylpfa,LOC107582990,LOC108249004,LOC108443170 coding upstream 157782 3236039 ~ 3241987 (+)
zgc:153733 LOC108275998 coding upstream 168555 3221273 ~ 3231214 (+)
mpv17l LOC108256073 coding downstream 67106 3470453 ~ 3477325 (+)
si:dkeyp-72e1.6 LOC108274424 coding downstream 76891 3480238 ~ 3483748 (+)
rrn3 rrn3,LOC104947155 coding downstream 82397 3485744 ~ 3500428 (+)
ppl ppl,LOC107720077 coding downstream 137763 3541110 ~ 3560678 (+)
dus1l dus1l,LOC107590391,LOC107654489,LOC107688109,LOC107601270 coding downstream 227092 3630439 ~ 3639871 (+)
G204678 NA non-coding upstream 42863 3353298 ~ 3356906 (+)
G204633 cd2bp2,LOC107582988,LOC107729467 non-coding upstream 180885 3215787 ~ 3218884 (+)
G204417 NA non-coding upstream 327043 3064905 ~ 3072726 (+)
G204410 NA non-coding upstream 363606 3034271 ~ 3036163 (+)
G204362 NA non-coding upstream 628459 2770686 ~ 2771310 (+)
G204771 NA non-coding downstream 184555 3587902 ~ 3590031 (+)
G204790 NA non-coding downstream 242416 3645763 ~ 3646675 (+)
G204774 NA non-coding downstream 244842 3648189 ~ 3649538 (+)
G204773 NA non-coding downstream 269637 3672984 ~ 3715580 (+)
G204815 NA non-coding downstream 373257 3776604 ~ 3786578 (+)
LOC113527909 NA other upstream 199636 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 386910 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 491726 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1213605 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 1411854 1917205 ~ 1987915 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 130942 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 563386 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 567832 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 1216871 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 1289130 4692477 ~ 4711316 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G306894 NA non-coding NW_019172846.1 APWO02000057.1 385602 ~ 391772 (+)