G214958 (LOC108280985,LOC108280981,LOC108280967,LOC108277599)


Basic Information

Item Value
gene id G214958
gene name LOC108280985,LOC108280981,LOC108280967,LOC108277599
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21516860 ~ 21558172 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254506
CTGctctttaaatttttatttataaaagacaGACTCACCAGGACATGGGTGGAGTTCAGTGGTATTGTTGCTATAGCTGACATGATTTTCTACACGGCAGGTGACTTTTCCATGATGATCTTTATTCAGTGTGAGAGTGCTGTTCCCGTTCTCCAGTTGAGGGAGTGTGTTTAAATCAGAAGTCCAGTTGAAGCGGAGATTGTCTCCATCAGCAGAACAGTACACTTTCATGACTCCAGGGGACAAGCAGCTGTACGACAATTTCACTGAGGACACCTCAGCTGCAGATTAGAGATAAACAAATTTACT
>TU254507
CACAAGAAAGTTTGCAAGATTTACTTTCATGCAGTCACAAGCAAGAGGTGACTTTTCCATGATGATCTTTATTCAGTGTGAGAGTGCTGTTCCCGTTCTCCAGTTGAGGGAGTGTGTTTAAATCAGAAGTCCAGTTGAAGCGGAGATTGTCTCCATCAGCAGAACAGTACACTTTCATGACTCCAGGGGACAAGCAGCTGTACGACAATTTCACTGAGGACACCTCAGCTGCAGATTAGAGATAAACAAATTTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254506 True 309 lncRNA 0.42 2 21516860 21558172
TU254507 False 256 lncRNA 0.43 2 21516860 21517608

Neighbor

gene id symbol gene type direction distance location
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding downstream 136644 21368754 ~ 21380216 (-)
arl9 arl9 coding downstream 149748 21360562 ~ 21367112 (-)
ints10 ints10,LOC105894096,LOC105894103 coding downstream 314991 21184962 ~ 21201869 (-)
klb klb coding downstream 342328 21165851 ~ 21174532 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding downstream 353799 21157480 ~ 21163061 (-)
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding upstream 27926 21586098 ~ 21613875 (-)
LOC113546932 NA coding upstream 113990 21672162 ~ 21683433 (-)
LOC117598919 NA coding upstream 114650 21672822 ~ 21673330 (-)
LOC117598868 NA coding upstream 117466 21675638 ~ 21676807 (-)
LOC117598954 NA coding upstream 125852 21684024 ~ 21684645 (-)
G214949 LOC108280967,LOC108280981,LOC108277545 non-coding downstream 11068 21435594 ~ 21505792 (-)
LOC117598825 NA non-coding downstream 12555 21500550 ~ 21504305 (-)
LOC117598822 NA non-coding downstream 18886 21496429 ~ 21497974 (-)
LOC113540570 LOC108277574,LOC108280967,LOC108277545 non-coding downstream 21242 21485240 ~ 21495618 (-)
G214947 NA non-coding downstream 48529 21419768 ~ 21468331 (-)
G214975 NA non-coding upstream 56712 21614884 ~ 21615115 (-)
G214970 NA non-coding upstream 57710 21615882 ~ 21616213 (-)
G214976 NA non-coding upstream 58430 21616602 ~ 21616832 (-)
G214977 NA non-coding upstream 62506 21620678 ~ 21621921 (-)
G214978 rest,LOC106604639 non-coding upstream 69957 21628129 ~ 21631867 (-)
LOC113528016 thegl other downstream 157670 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 244353 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 488779 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 611589 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1303231 20205339 ~ 20213629 (-)
G215187 NA other upstream 118099 21676271 ~ 22269092 (-)
G215188 NA other upstream 127532 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 136700 21694872 ~ 21695359 (-)
G215182 LOC108275153 other upstream 138488 21696660 ~ 22285703 (-)
LOC117598964 NA other upstream 139571 21697743 ~ 21698174 (-)

Expression


Co-expression Network