G214977


Basic Information

Item Value
gene id G214977
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21620678 ~ 21621921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254527
ACTTCACACGTGTTCTTGTGCATATCGGTTTATCTCGCGTGTTCTCGTGCATATCGGCTCGGCTCTCCTCGCGCCCATGTTCTCGTGCAccttgaagtttttttttttccctcgtgCACTTTTTCTGCTCACAGCTTCTTGTCATGTTGAGCTCTGCGGCCATTTTCCCACAGCACCACCACGCTGGCAGAGCAAACGCTTCAACTCCCCAGCCTGAGTGAAGACATTctcacaaattaattaattaaataaataaaataataagaaagcaGCTGTTtctttgttcatgtttaaatgTCTTGTTAGAAAGTGTCGACACGCGCGAgacaaatacaaaagaaaaacttttaacTCGTGTTAAAAACTGCAAATCTGAGCGTTTGTTGGACAGCTCCCAGAGTCAGGAAATAAAATCAGCCATGATGGAATGACGAGGAGAAAAAACACTCCATTTTGGATGTAAACGTTTTTACGACATATCATATAAGTTAAGTAGttgttgttttctcttttaaattaaagtgtcgactttttaaagaaaggaaaaaactcTTAAGAAACTTTAGAAAGAATTTCCGGCCTCAAAAATCACGTCCAATTAAAAGTCGCTGTCCAGctcggacacacacacacacacacacacacacacacacactcttcagcaAGCTGTTACACACCAATGTGTTGAAGTTGTGTTATAAACCCTGGCTATACCTGCTAGCTAGGGTTAGTAAACTATCTTTAGCTAGCTACTTTTCCGGAAGAAGTACATACATGACCACAacgcttttaaaaataaactagtTGTGGGGGAGATTTTTCGACGATTTTGGTGTTTTGTTGTGTCAGATATTGTACTTCCAGAGAAAAGCATTTagttgtgaagtgtgtgagagtgtgttagcCGTGGTCCTGATCTCCGTTGCTGGACAGCGCCTCTCACACACCCTGCCTCCATTTTACAAGCCTACACACTTTTACTGAACTCCGAAAAAAAAGGCGGAAAAAGTGCGATTTTCGGAGTTTAAACGTATCTTGGTTCGATAGAAAACTTACCCTGCACTTTCGTTCGACGTCTGTCGATATTTTCGAGAAGCTTCTTCGAAGTTTTAGACTCTCTCAAAACTAACTTTTCAGCTAAACTTGTTCAGGGAAGTACGAGTCTCGACGCATTCCAACACAGCGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254527 True 1188 lncRNA 0.41 2 21620678 21621921

Neighbor

gene id symbol gene type direction distance location
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding downstream 6803 21586098 ~ 21613875 (-)
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding downstream 240462 21368754 ~ 21380216 (-)
arl9 arl9 coding downstream 253566 21360562 ~ 21367112 (-)
ints10 ints10,LOC105894096,LOC105894103 coding downstream 418809 21184962 ~ 21201869 (-)
klb klb coding downstream 446146 21165851 ~ 21174532 (-)
LOC113546932 NA coding upstream 50241 21672162 ~ 21683433 (-)
LOC117598919 NA coding upstream 50901 21672822 ~ 21673330 (-)
LOC117598868 NA coding upstream 53717 21675638 ~ 21676807 (-)
LOC117598954 NA coding upstream 62103 21684024 ~ 21684645 (-)
LOC117598776 NA coding upstream 63776 21685697 ~ 21691576 (-)
G214976 NA non-coding downstream 3846 21616602 ~ 21616832 (-)
G214970 NA non-coding downstream 4465 21615882 ~ 21616213 (-)
G214975 NA non-coding downstream 5563 21614884 ~ 21615115 (-)
G214958 LOC108280985,LOC108280981,LOC108280967,LOC108277599 non-coding downstream 62506 21516860 ~ 21558172 (-)
LOC117598825 NA non-coding downstream 116373 21500550 ~ 21504305 (-)
G214978 rest,LOC106604639 non-coding upstream 6208 21628129 ~ 21631867 (-)
G214980 NA non-coding upstream 12737 21634658 ~ 21634864 (-)
G215168 NA non-coding upstream 23198 21645119 ~ 21645894 (-)
G215169 NA non-coding upstream 30269 21652190 ~ 22026318 (-)
G215194 NA non-coding upstream 101550 21723471 ~ 22134451 (-)
LOC113528016 thegl other downstream 261488 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 348171 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 592597 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 715407 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1407049 20205339 ~ 20213629 (-)
G215187 NA other upstream 54350 21676271 ~ 22269092 (-)
G215188 NA other upstream 63783 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 72951 21694872 ~ 21695359 (-)
G215182 LOC108275153 other upstream 74739 21696660 ~ 22285703 (-)
LOC117598964 NA other upstream 75822 21697743 ~ 21698174 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017797 NA coding CM030131.1 CM030131.1 23844922 ~ 23857827 (+)