G215169


Basic Information

Item Value
gene id G215169
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21652190 ~ 22026318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254777
TGAATTTAGGTCATTTATTAAGCTTGCTTATTGGACGTAAATAGTTTTAAACCTTAAAAGACAGACTGTTGCTGGAGGTCACGTGACGCGTTAATGGCGGCGCAGCTTTGAAAAGACGCTCTCCACACCACTCACATATTTCCAGGTCTTTGAAGGATAACTAAATGCTAAATTACGTGAAATCATCGAAAATGTCGACCCAGACCACATTTGTTCATACTCAGGAGGACACACCCTCTCATTATTAAGAAGAAATTCAGGGAGTCCTCCACCGCTATCTCCCGAGCTGAGCTGGAGGGCGCCATTTTGGCCGGAATGAAACAAGCCTTGAGCGAGCAACAGACTGATTTAGACAGAATTGTTTCTGCCGCTGTTCAATCTGCCATAGATGATGTGCTGACGCCTCAGGTCTTAGATAAATAAAGCAGTCAAGTTCGGCAGCGAAACTCTTCATTTCTTCCCGGATTACAGCGCAGACACCACTAAGAAAAGGAAGGCTTTCACTGAGGTGCGGAAGAAGATGGAGACACTCGGAATTCAGTCGGTTCTCCTCTTCCATGGTCAAGGTCATCCATGAGTGTGGAGGGAAGTggtagctcagtggttaagacgttggacttttgctcagaaggttgagagttcaaatcccagcaccaccaagctgcccctgctgggcccttaaccctcagctgcttaattgtataaatgagataattgtaagtcgctctggataaaggcgtctgctaaatgctgtaactgtaaatgcagGGAGATAAAACCTCTTTCAATCGCTGTTGGAGGCCGAGCAGTATCTTCTGTCTTCACGGCCTGGGAGCGACACCGCTATAGCATCTGTGGGACTGTGTCTTCAACTGGCCCGCTGTGTTGATATGGATATGGAGCAATCCGTTACTGAGCAGAGATAAACTACACAGCCAGCGTACTGTATATGCTGTtgtaaagcatttattttatttttcttatttaccatcttattttaatattttctttggcCACAAAATAGGTTATGGACATTCTTGGTTACTGAGGTAGGTccccattttattttctttttctttaggtTACTAAATCTCTGAGCAGGCTGAGGCTTTATATAGAAATTTatgatgtgatttattttttgaatcatttttattacaatcATAAATCCTTCCCTACTCTAGTTATAGCCTAATAATCTCTAGTCAGTAGTGGTTGGGATCACACGGCGATTGAGCAGTCACGGCTCTTGTAAACTGCAGTCTTACGCTTGCCAGAGGAGTCGTAGTGTCCTGGCGGATTGCAGAGTGTCTGTACATAGTTTAGATTATGTTCATCTGCGTTCTGTTCATGGCGGCAACTGactaaaatgtacaattttctTCAAATGGTTTTCGAGGTCTGGGCTTTTCTACGCTCCCTTTTGTATTTCTGCCTTAATGAATCATACCAAAGTCCTCTTAACATCTATATATGCACCGAACGTATGTGACCGCCAATTTATGGACAATATTTCTGGAACCTTGATTCATTTCAATGACTATCACATTATTCTAGGTGCAGACTTCAATGCTTGTGTCCACCCTGAGTTAGACCGCTCTTCCACTGACCCCACGGTGGCAACGCCATCTTCAGTAGCTCTTAATAGCTTAATTGCACAGAGCTTAATCTTGCAGACCCATGGCGTAttaaaaatgctaatgctaaagcgTATCCATTTTATTCCACCCGTCACAAGTCATTTTCTAGGATTGATTATATTTTGATTGATCCCTCTTTGGTCCAACACATCGGTACTATTGATATTTTGCCTATTTTGATATCGGATCATTCACCGGTAACTTGTAATATCACTACAGGTGTCAAATTCTCTAAAGTCAATAGATAGCGCTTTAATAATACACTATTATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254777 True 1912 lncRNA 0.42 2 21652190 22026318

Neighbor

gene id symbol gene type direction distance location
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding downstream 38315 21586098 ~ 21613875 (-)
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding downstream 271974 21368754 ~ 21380216 (-)
arl9 arl9 coding downstream 285078 21360562 ~ 21367112 (-)
ints10 ints10,LOC105894096,LOC105894103 coding downstream 450321 21184962 ~ 21201869 (-)
klb klb coding downstream 477658 21165851 ~ 21174532 (-)
topaz1 topaz1 coding upstream 526406 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 603563 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 635242 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 651846 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 680236 22706554 ~ 22729853 (-)
G215168 NA non-coding downstream 6296 21645119 ~ 21645894 (-)
G214980 NA non-coding downstream 17326 21634658 ~ 21634864 (-)
G214978 rest,LOC106604639 non-coding downstream 20323 21628129 ~ 21631867 (-)
G214977 NA non-coding downstream 30269 21620678 ~ 21621921 (-)
G214976 NA non-coding downstream 35358 21616602 ~ 21616832 (-)
G215221 NA non-coding upstream 53844 22080162 ~ 22136007 (-)
G215224 NA non-coding upstream 95138 22121456 ~ 22133365 (-)
G215172 NA non-coding upstream 99354 22125672 ~ 22140140 (-)
G215228 NA non-coding upstream 138252 22164570 ~ 22197412 (-)
G215249 NA non-coding upstream 364038 22390356 ~ 22397751 (-)
LOC113528016 thegl other downstream 293000 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 379683 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 624109 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 746919 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1438561 20205339 ~ 20213629 (-)
LOC117598917 NA other upstream 185032 22211350 ~ 22211895 (-)
LOC117598898 NA other upstream 188226 22214544 ~ 22215344 (-)
LOC113546935 NA other upstream 189424 22215742 ~ 22217034 (-)
LOC117598811 NA other upstream 190990 22217308 ~ 22219064 (-)
LOC117598884 LOC108275153 other upstream 196079 22222397 ~ 22222851 (-)

Expression


Co-expression Network