G215211


Basic Information

Item Value
gene id G215211
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21957320 ~ 22217070 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254973
GAGCTGCACTCAACACAGcttctctgtaatatttatgcaaatctcCATCTCCTCTTGTAATATTAGCACCGTGCTTATCTAGAGAGGAAGCGCTTCTCATTAGTCCTCCttcaacacaaacatgtttgcttcagctccactgctgctgctggctctCGCCCCCTatGTGTTCTGTGCTACTGAGCTCATCCAGCCAGACTCAGTGCTTATAAAGCCAGGAGAGACTTTAACCATCACCTGTAGAGTGTCTGGAGCTTCTATCACTGATAGCAGCAGCCACTATGGAACAGCTTGGAttcgacaacctgcaggaaaagctctggaatGGATCAACATCATTTATTATGATGGGAGTATTCATAAGAAAGATTCCCTTAAAAACAAGTTTGTCGTCTCTCGAGACACTTCCAGTAACACCGTGACCTTACGGGGACAGaacatgcagactgaagacacagctgtgtattactgcgctcgtgttg
>TU254974
GAGCTGCACTCAACACAGcttctctgtaatatttatgcaaatctcCATCTCCTCTTGTAATATTAGCACCGTGCTTATCTAGAGAGGAAGCGCTTCTCATTAGTCCTCCttcaacacaaacatgtttgcttcagctccactgctgctgctggctctCGCCCCCTatGTGTTCTGTGCTACTGAGCTCATCCAGCCAGACTCAGTGCTTATAAAGCCAGGAGAGACTTTAACCATCACCTGTAGAGTGTCTGGAGCTTCTATCACTGATAGCAGCAGCCACTATGGAACAGCTTGGAttcgacaacctgcaggaaaagctctggaatGGATCAACAGCATTTATTATGATGGGGATATTTATAAGAAAGATTCACTTAAAAACAAGTTTGTCGTCTCTCGAGACACTTCCAGTAACACCGTGACCTTACGGGGACAGaacatgcagactgaagacacagctgtgtattactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254973 True 482 TUCP 0.46 2 22216506 22217070
TU254974 False 471 TUCP 0.45 3 21957320 22217070

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 263686 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 265744 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 272675 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 280513 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 283990 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 335654 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 412811 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 444490 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 461094 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 489484 22706554 ~ 22729853 (-)
G215168 NA non-coding downstream 311426 21645119 ~ 21645894 (-)
G214980 NA non-coding downstream 322456 21634658 ~ 21634864 (-)
G214978 rest,LOC106604639 non-coding downstream 325453 21628129 ~ 21631867 (-)
G214977 NA non-coding downstream 335399 21620678 ~ 21621921 (-)
G214976 NA non-coding downstream 340488 21616602 ~ 21616832 (-)
G215249 NA non-coding upstream 173286 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 229052 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 257951 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 260906 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 516659 22733729 ~ 22734095 (-)
LOC117598870 NA other downstream 1192 21955300 ~ 21956128 (-)
LOC117595695 NA other downstream 4795 21952036 ~ 21952525 (-)
LOC113546938 NA other downstream 8970 21947731 ~ 21948350 (-)
LOC117598794 NA other downstream 18746 21794381 ~ 21938574 (-)
G215202 NA other downstream 20095 21792783 ~ 21937225 (-)
LOC117598811 NA other upstream 238 22217308 ~ 22219064 (-)
LOC117598884 LOC108275153 other upstream 5327 22222397 ~ 22222851 (-)
G215184 NA other upstream 8571 22225641 ~ 22257250 (-)
LOC117598812 NA other upstream 10371 22227441 ~ 22227947 (-)
LOC117598926 NA other upstream 13088 22230158 ~ 22230602 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location