G215221


Basic Information

Item Value
gene id G215221
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22080162 ~ 22136007 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254985
GCTCCTCCAGAATCCATCGACGCGGAGTGCACTGCCAGCATGAGTCAGGGATCGAGTGGTGTTCAAGTGGTACTTGTCCAGACTGTATTTTCTTTCGGGTGTGAGTCTTTTGCTCTGTCGGACATAAACAATGGGTCTCACCTTTAGCAGAAGCTTGTGTGTGTCCTTGGTCACTACATTAGACACTAGAGTAAAATAGGGGTGTAACGCAATGAAACGCAATGATTTGCGGGACTGTTTTTTGTATCTGTCTGTGATATTTGAGTTAgttctgttttccaaaataaaaacaaactagtagccttaTTTAAACCACCATAACCCTGATCAGGCAGTTACAAAAGATGATGGATTGACCACTCACGCCTGTGGAAGAGGAAGAAAGCTCCCACTTGCGCAACTATTTTGTTGGGGTCTCAGCCCTGATACACATCTCTAGTCATAGCCAGATGTCCTGTGAACATTACTGGCAAGctttcttacaaaaaaacaaaaaacgaatAGTGCACTGTTTATtcttgtctgtatttgtatgtgtttaaaaTCATATAATCTTTTCATTCCAAATAAAGTATGTATATTCggacagaaaacctgtttacttgaAATTTCCCTATAATGGAAGCCA

Function

GO:

id name namespace
GO:0031514 motile cilium cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254985 True 628 lncRNA 0.40 2 22080162 22136007

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 386528 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 388586 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 395517 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 403355 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 406832 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 416717 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 493874 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 525553 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 542157 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 570547 22706554 ~ 22729853 (-)
G215217 NA non-coding downstream 1254 22022086 ~ 22078908 (-)
G215169 NA non-coding downstream 53844 21652190 ~ 22026318 (-)
G215168 NA non-coding downstream 434268 21645119 ~ 21645894 (-)
G214980 NA non-coding downstream 445298 21634658 ~ 21634864 (-)
G214978 rest,LOC106604639 non-coding downstream 448295 21628129 ~ 21631867 (-)
G215228 NA non-coding upstream 28563 22164570 ~ 22197412 (-)
G215249 NA non-coding upstream 254349 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 310115 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 339014 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 341969 22477976 ~ 22480922 (-)
LOC117598963 NA other downstream 107137 21972594 ~ 21973025 (-)
LOC117598858 NA other downstream 109744 21969852 ~ 21970418 (-)
G215188 NA other downstream 109748 21685704 ~ 21970414 (-)
LOC113546933 NA other downstream 113780 21965890 ~ 21966382 (-)
LOC117598909 NA other downstream 117155 21962438 ~ 21963007 (-)
LOC117598917 NA other upstream 75343 22211350 ~ 22211895 (-)
LOC117598898 NA other upstream 78537 22214544 ~ 22215344 (-)
LOC113546935 NA other upstream 79735 22215742 ~ 22217034 (-)
LOC117598811 NA other upstream 81301 22217308 ~ 22219064 (-)
LOC117598884 LOC108275153 other upstream 86390 22222397 ~ 22222851 (-)

Expression


Co-expression Network