LOC117598814


Basic Information

Item Value
gene id LOC117598814
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22326726 ~ 22364265 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255018
TATAGCTGGGGTAGCGACGACGCTTTTGACTACTGGGGAAAGGGAACGACGGTCACCGTTACTTCTgCAGTGCAAGGCCCCCCGCAGTCCCTGTTTCCCGTGTGGCAGTGCGGCTCGGCCTCAGACGGTTTAATCACTCTTGGCTGCGTCACGCGCGATTTGGCCTCCGCCGACGGACTGATCTTCAAATGGGCGGATGAGAAAGGAAGCGCGCTGACTGACGTCGTGCAATACCCGGCGGTGCGCGGGAGCGGAGGGTTCACCTCGGTGAGCCAGGTGCGCGTCAAGGCTTCCGACTGGACCCAGAGCAAGAAGTTCACGTGCCGAGTCGAGAATGCCAAAGGATACAAAGAAGCGCTCTTGCAAAAGAAAGttgtGCCCGAGCTCCCTGCATCTCTGCTTCTAACAACTCCAACCCAAACAGAAATAGACAATGGAACAGCTACCTTCATCTGCTTAGCTACACAATTTtcccctaaaacacacacatttaagtGGACTCGTGGCAGCACGGAACTCGGTAATAAGGTCAAACACACCATATTAAGCCCGGATAAAGATGCTTACACTGCTGTAAGTATTTTGGAAATCAGCGCCAATGAATGGACGGGTTCATCATCTCCAGTTAAGTGCGAATTCCACCAGAAGAAATGGACTGCGGCCAAAGAGGCGATTTATgTGTCAGTTGACTCAAAACCACCACAGGTGAAAATAATCCCACCTTGCGCCAGGGACATGCTGCTCAAAAGAGCTGGCCAGCTCGAGTGCAGGGCCGAAGGACAGGTGGGCTTCAAGGGCATTAAATGGCTTATTGGCGGTACAGAGATCTCTTCCCTAGCGGAAAAAGACGTATCTACGGAAACCACGGTCACACTCACGACCCCGATCAGTTTCGATGAGTGGAGCGATGGCACCAAATTCACCTGCGAAGTGGAACATTCAGCATTCGCCCTCCAGTATGAAACAGTAGACTACCAAAGAGTAAATGGTAGGAAATGCTTTTACTACTTATACGTAGTCTGGCTCTTTATTTGTATGATAAAGCTATGAGGAATTTTTTTAAGAAGcagaaaagcacattttttaagGTGATATCTAATTAGATTGAAAATATGTGCAAATTATGATAtatgaaaattgtttttttagtttatgcATGACCAATGTTCCCCAACATACGGAAACAATGCAAGAGAAGGAAACTGAGCATGTTTTGACCTGAACTGTGATTTCATATTCTTAGGCAAAAGGAATGCCCTGGTTTACTTGCTCGCTCCACCAGAGAGCTCAGGTGAATCGGTGACCCTGACTTGCTATGTAAAAGACTTCTACCCTAAGGAGGTGGCTGTGTCTTGGCTTGTTAACGATGAACAAGTGGACGATGAGGGCGGCTATGAGCAGAACACCACTAGAGTTATCGAGAGAGGCAACCTCTTTTCAGTGTACAGCCAGCTGATTGTGAAAACTGCAGAATGGAAGAGTGGCGCCGTGTACAGCTGCAGGGTTTATCACGAGTCCATCGAGGACCCTGTGCGCCTCATATCCAGATCCATCACTATCACTTCAAATCCACCCACCTTAGTGAATCTCAGCCTGAACGTTCCACAAACCTGCCATACGTTTTAGAAATTGTGTTGTCTGCTTTTaatgcttgttttatttttatttttgccctGTCttctatgtcttttttttttttttaattaatgcaatGTCATTGTCTTGAAGTCTGTCTAATGCTTGTGTGTCCTTGGTTTTTGGAATATGTCTGATGCAATATTACACtgaaacaatgacaataaaaaaatccttcagCATGTACCCTGTGCAGTACGGaaatattatagtattatattacACTAACTTTATACATCACTATCTTAGCATATCCTAAATATGGATATCCCAAAATAATGCCATGGCTGCACCTGGATTGGATTTGAGTTAAGACATTTTAGtcacagctgctttaatgtcCTCCTTCAGCCTTTAAGGGAAATATCTGATTGCATTTTCCCTAAAACTGTACAGTATCTTTCAAAATGCTCACaaatatacaattaaaaaataagcaaataattaaTATGGGCTTCAAAGATCTATCAAATATCTctttaaattatttcataaaattaAGAAAGACAAATCTATTAATAAACTATTAATTTTGTTAATAGAGATTGATCCAAAGCTTTCCCCCAC
>TU255019
AGTAAATgatttagaattaaaaaaattttaagaaaGCACTGTTAGCTTCACAATactgtagtgatgagtgtaattCTGCtaagttattaataataataataataataataataatattaataataataataataaattgtcgatttcaatgtaaaataaacaattgtatgtaaaaaaaaaaactcgtttttatataaataagtcAAATTTATTAGTTTAAGTTTTTGTTGACTTGTCTCATGTTTCAAAAAAATTCGTACCTTACAATTCGTACCTTACCAGAACGGATTAAATCGTAAGAAAAGGGCGTGTTTAGTGATCGTACCCTTTTTCTTCCTCACAATGTCAATCGTCTGAAATGCAACGAAATCTCATTCAGTTGTAAAACTGCGTACGGAGTTTGTGCGAGAGCAGTGCAAGGCCCCCCGCAGTCCCTGTTTCCCGTGTGGCAGTGCGGCTCGGCCTCAGACGGTTTAATCACTCTTGGCTGCGTCACGCGCGATTTGGCCTCCGCCGACGGACTGATCTTCAAATGGGCGGATGAGAAAGGAAGCGCGCTGACTGACGTCGTGCAATACCCGGCGGTGCGCGGGAGCGGAGGGTTCACCTCGGTGAGCCAGGTGCGCGTCAAGGCTTCCGACTGGACCCAGAGCAAGAAGTTCACGTGCCGAGTCGAGAATGCCAAAGGATACAAAGAAGCGCTCTTGCAAAAGAAAGttgtGCCCGAGCTCCCTGCATCTCTGCTTCTAACAACTCCAACCCAAACAGAAATAGACAATGGAACAGCTACCTTCATCTGCTTAGCTACACAATTTtcccctaaaacacacacatttaagtGGACTCGTGGCAGCACGGAACTCGGTAATAAGGTCAAACACACCATATTAAGCCCGGATAAAGATGCTTACACTGCTGTAAGTATTTTGGAAATCAGCGCCAATGAATGGACGGGTTCATCATCTCCAGTTAAGTGCGAATTCCACCAGAAGAAATGGACTGCGGCCAAAGAGGCGATTTATgTGTCAGTTGACTCAAAACCACCACAGGTGAAAATAATCCCACCTTGCGCCAGGGACATGCTGCTCAAAAGAGCTGGCCAGCTCGAGTGCAGGGCCGAAGGACAGGTGGGCTTCAAGGGCATTAAATGGCTTATTGGCGGTACAGAGATCTCTTCCCTAGCGGAAAAAGACGTATCTACGGAAACCACGGTCACACTCACGACCCCGATCAGTTTCGATGAGTGGAGCGATGGCACCAAATTCACCTGCGAAGTGGAACATTCAGCATTCGCCCTCCAGTATGAAACAGTAGACTTGCTATGTAAAAGACTTCTACCCTAAGGAGGTGGCTGTGTCTTGGCTTGTTAACGATGAACAAGTGGACGATGAGGGCGGCTATGAGCAGAACACCACTAGAGTTATCGAGAGAGGCAACCTCTTTTCAGTGTACAGCCAGCTGATTGTGAAAACTGCAGAATGGAAGAGTGGCGCCGTGTACAGCTGCAGGGTTTATCACGAGTCCATCGAGGACCCTGTGCGCCTCATATCCAGATCCATCACTATCACTTCAAATCCACCCACCTTAGTGAATCTCAGCCTGAACGTTCCACAAACCTGCCATACGTTTTAGAAATTGTGTTGTCTGCTTTTaatgcttgttttatttttatttttgccctGTCttctatgtcttttttttttttttaattaatgcaatGTCATTGTCTTGAAGTCTGTCTAATGCTTGTGTGTCCTTGGTTTTTGGAATATGTCTGATGCAATATTACACtgaaacaatgacaataaaaaaatccttcagCATGTACCCTGTGCAGTACGGaaatattatagtattatattacACTAACTTTATACATCACTATCTTAGCATATCCTAAATATGGATATCCCAAAATAATGCCATGGCTGCACCTGGATTGGATTTGAGTTAAGACATTTTAGtcacagctgctttaatgtcCTCCTTCAGCCTTTAAGGGAAATATCTGATTGCATTTTCCCTAAAACTGTACAGTATCTTTCAAAATGCTCACaaatatacaattaaaaaataagcaaataattaaTATGGGCTTCAAAGATCTATCAAATATCTctttaaattatttcataaaattaAGAAAGACAAATCTATTAATAAACTATTAATTTTGTTAATAGAGATTGATCCAAAGCTTTCCCCCAC
>XM_034309813.1
CATTATCAGTAATATATGGATAGATCGGACAGCCAGGTCTTTTTGAACGATGTCAGAGTGGATTTGTGTCACTGTGACGACGCTTTTGACTACTGGGGAAAGGGAACGACGGTCACCGTTACTTCTgCAGTGCAAGGCCCCCCGCAGTCCCTGTTTCCCGTGTGGCAGTGCGGCTCGGCCTCAGACGGTTTAATCACTCTTGGCTGCGTCACGCGCGATTTGGCCTCCGCCGACGGACTGATCTTCAAATGGGCGGATGAGAAAGGAAGCGCGCTGACTGACGTCGTGCAATACCCGGCGGTGCGCGGGAGCGGAGGGTTCACCTCGGTGAGCCAGGTGCGCGTCAAGGCTTCCGACTGGACCCAGAGCAAGAAGTTCACGTGCCGAGTCGAGAATGCCAAAGGATACAAAGAAGCGCTCTTGCAAAAGAAAGttgtGCCCGAGCTCCCTGCATCTCTGCTTCTAACAACTCCAACCCAAACAGAAATAGACAATGGAACAGCTACCTTCATCTGCTTAGCTACACAATTTtcccctaaaacacacacatttaagtGGACTCGTGGCAGCACGGAACTCGGTAATAAGGTCAAACACACCATATTAAGCCCGGATAAAGATGCTTACACTGCTGTAAGTATTTTGGAAATCAGCGCCAATGAATGGACGGGTTCATCATCTCCAGTTAAGTGCGAATTCCACCAGAAGAAATGGACTGCGGCCAAAGAGGCGATTTATgTGTCAGTTGACTCAAAACCACCACAGGTGAAAATAATCCCACCTTGCGCCAGGGACATGCTGCTCAAAAGAGCTGGCCAGCTCGAGTGCAGGGCCGAAGGACAGGTGGGCTTCAAGGGCATTAAATGGCTTATTGGCGGTACAGAGATCTCTTCCCTAGCGGAAAAAGACGTATCTACGGAAACCACGGTCACACTCACGACCCCGATCAGTTTCGATGAGTGGAGCGATGGCACCAAATTCACCTGCGAAGTGGAACATTCAGCATTCGCCCTCCAGTATGAAACAGTAGACTACCAAAGAGTAAATGGCAAAAGGAATGCCCTGGTTTACTTGCTCGCTCCACCAGAGAGCTCAGGTGAATCGGTGACCCTGACTTGCTATGTAAAAGACTTCTACCCTAAGGAGGTGGCTGTGTCTTGGCTTGTTAACGATGAACAAGTGGACGATGAGGGCGGCTATGAGCAGAACACCACTAGAGTTATCGAGAGAGGCAACCTCTTTTCAGTGTACAGCCAGCTGATTGTGAAAACTGCAGAATGGAAGAGTGGCGCCGTGTACAGCTGCAGGGTTTATCACGAGTCCATCGAGGACCCTGTGCGCCTCATATCCAGATCCATCACTATCACTTCAAATCCACCCACCTTAGTGAATCTCAGCCTGAACGTTCCACAAACCTGCCATACGTATTGCCTGATGTTGACAGAGCTCTTCCACCATGAGGCGgagatgatggatgatgatagCATGGCAAACACTGCCTTAACATTTGTATTTCTCTTCCTCATCACCCTCTTCTACAGCATCGGAGTGACTGTTATCAAGCTAGCTCAGCGTGTGGCTGAGCCCAGAATCACCATCAGTATCAAGACAACAGACAAGGATGTTGATCTGCTTTGTTGGTTGGATGGTTTTCATCCTAAAAAAATTGATGTTCAGTGGTACAAGGGTGATCAGGTGctcagacagggagagaaaccATCAAGATATTCAAGATGTCAGCACTGGAGAAAAGGTGTATTCCGCGCAATGAGCCAAATCAGGATTAATGCACAGCAATGGAATGAAGGCACAGTGTTCGCCTGTAAGGCCACACACAACTCAACCTTCAGTGAAACATGGAGCAAGTGCCAAGCTGCTCCCACATCCACACCACAGATACGTCTGGAGAAACCTCGTCTCATGTCAGTATTGACAGATTCACAAGTAACAGCCTCCTGTGTTGTTGAAACTGAGTACACCATCACCAAAGTGTCATGGCTTGTAGATGGAAAGCCAAAAACAGGCACAGCCATCTCGACGAGACTGGGCGAGACTGTTAGCAACCTGACTATCTCTACAGAAGAATGGAAAAACTCGGGGACAATAAAATGCACAGCTGAACATCTATGTTTCGGCAAAGTAGAGAAGATGATTGATATTATAGAACCTGTGAAGAAAACTCCTACAGTGGAAATCAGGAGGATTCTTGCAGACATACCGAAGGGACACAGTGCAGTGCTGGAGTGTGTCGGAAGAGATCTGCCCTCTGGTGAGCTCTCTGTCACCTTCCAGGCCAATGAAACCATGTTCCCTGACGTTCAGTACGTGGATCTGCCCAAAGGCCTGGACACAGTTACTGTACGCTTCACTGTTCCCAAAACACACCAAACCAAAGACAAACGTTTCACCTGTCAGATTCAGCAAAGCCATTCCATGCAGTGGAAGTCCAATTCTACAGGAAAACTTTTTGATGACCCTTCAGTGGAACTTTCAGCTGTTTCCAGCATTGACAAATCCAGATCGATGACAAAAAAACTTATTTGTTTTGGAACTGGATTTAACCCAAAGATCAAGTGGCTCCCTGAATCTTTGAACAATCCTCCCTATGAAGCAACGATGCAAGCAGATGGACGTGTGAAAGTGTCCAGTGAGATATCAGTTCCTCAACAGGAGTGGAGTAATGGAGTGGAATTTAAGTGTGAGGTCAGTGATCAAGATCATCCCAAACCTGTCCAGAAGAGCACCAGTGTTTGTACAGCTCATTCAAATTCCAAACCACAGATACGTCTGGAGAAGCCACATCTCATGTCAGTATTGACAGATTCACAAGTAACAGCCTCCTGTGTTGTTGAAACTGAGTACAACACCAAAGTGTCATGGCTTGTACACGGAAAGCGAAAAACAGGCACAGCCATCTCGACAAGACTGGGCGAGACCGTCAGCAACCTGACTATCTCTACAGAAGAATGGAAAAACTTGCAGACAATAAAATGCACGGCTGAACATCTATGTTTCGACAAAGTAGAGAAGACGTTTAATATTATAGAACCTGTGAAGAAAACTCCTACAGTGGAGATCAGGCGGATTCTTGCAGACATACTGAAAGGACACAGTGCAGTGCTGGAGTGTGTCGGAAGAGATCTGCCCTCTGGTGAGCTCTCTGTCACCTTCCAGGCCAATGAAGAAACGTTCCCTGACGTTCAGTACGTGGATCTGCCCAAAGGCCTGGACACACTGATTGTACGTGTCACTGTTCCCAAAACACACCAAACCAAAGACAAACATTTCACCTGTCAGATTCAGCAAAGCCATTCCATGCAGTGGAAGTCCAATTCTACAGGAAAACTTTTTGGTGACCCTTCAGTGGAACTTTCAGTTGTTTCCAGTGTGGCTCAATCTGCATCAACGACACAAAAACTTCTTTGCTCTGGAACTGGACTTAACCCAGAGATCAAGTGGCTCCCTGAATCTGTGggtaacactcagaggaaagtaaTAGTGGAAGGTGATGGACGTGTGAAAATGTCCAGTGAGCTATCGGTTCCACAGCAAGAGTGGAATAGTGGAGTTAAATTTACCTGTCAAGTCAGCGATCAGGATCCTCTCAAACCTGCCGAGAAGAGCACCGATGTTTGTGCAGTGACTCCAGCTTTTGCTCAGACAGCACAGGTTTTCCTGTTAGCTCCCTCCATCAGTGATATGAGAGCAAATGATCAGGTCTCTGTCACCTGTCTGCTGGTGGGCCACAGGCTCAAGGACTTCACGATTATTTGGAAAGTAGGAAAGGACAGTTCCTCTCACGGTGTGACCACACACTCTCCCAAAGCCCACAGTAATGGAACAGAGAGTCTCCAAAGTGTTCAAAAGGTTCCGGCTGCAATGTGGAACGCATACACAAGTGTCTCCTGTGAGGTGAAACACCTCTGCTCCAACAAAACACAGCAACACATCATCTCTAAAACCAGAGAAGTCAAAAGTCCCACCATCCGAATTTTCATTCCCAGTGACGACGATCTCTCAGGATTTCACAACACATCTCTTCTCTGCTTGATTGACGGCTTCCACCCTGCTGATATCTCTGTGCACTGGGAGCTGAACGGCAAACGGCTGGATGCGTCTCGCTTCACCAACAGTCCAGTCGGCATTCGCTCTGCATGGGGTGGTTATTCCATGCACAGTGCACTGATATTACTAGCATCAAAAAGGGAAGATGGCAATTTTTCCTGTGTGGTCAGCCATGAGTCATCCAAAGAGCCGATCATCAGCACAATAGACAACATATACGCCTCTGTGAATGAATGTCCTCCCTCTGTGGAGCTGCTGCAGGGTCAAGATGAGCTGGTGTGTCTGGTGTACGGTTACAGCCCCTCAGCAATTAACATCACCTGGCTCCAAAACAGTGTGAGTGTACAGCATGAGCATAGAACCAGCAGCTCTGCCAAAGGGTCGGATGGGAAATTCAGCATTAAAAGCCACCTGACTGTCAAAGCCTCTGAATGGGCACCTGGAGCCACATACACGTGCCATGTCGAGCATATTACTGGCGTCGTCACTCgcagcatctccaaaacagaatttattgAAAAGACGATATACTTTGATGAGAACAAGTCTGATGCTAGCACTCTGGACCAGGCTGAGGAAACCTGGAACATGGCCTGTGCCTTCATCATACTCTTCATCATCTCTCTCCTCTATGGCTGTTCAGTGACTCTGGTCAAAGTGTAAACTGCTTGATCAGCTGTTTAGGGCACCTTTTAGAGTTTAGATTAAGACTTATATAATGCTTTATTGCTGTATTGTAtttgtttgaataaaaaaaaatcaattcttaatgacttttttaaattgataGCTGCAAGTGAGTAAAAAGTCTTATGAGTCTTTTTTGAGTCTTATTCATATGAAGGATATATATTCAAAACCATTCCTTAATTTGAATTACGTTTGAattatcaatgttttttttagtctATTGTTAACAGCAGTGCCAGTGTGGTTTTGATTATTAATTCACTATTTCACCAGAAGATGTTAAAATAATAagtgaacaaatgaaataaaattcatataCAGACTCCCTGAGAATGAga

Function

GO: NA

KEGG:

id description
K06551 SIRPA_B1_G, CD172; signal-regulatory protein alpha/beta1/gamma

RNA

RNA id representative length rna type GC content exon number start site end site
TU255018 False 2202 TUCP 0.43 5 22339042 22364265
TU255019 False 2208 lncRNA 0.41 5 22339042 22344517
XM_034309813.1 True 5093 mRNA 0.47 18 22326726 22345779

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 633092 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 635150 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 642081 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 649919 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 653396 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 188459 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 265616 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 297295 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 313899 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 342289 22706554 ~ 22729853 (-)
G215228 NA non-coding downstream 129314 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 186586 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 190719 22080162 ~ 22136007 (-)
G215224 NA non-coding downstream 193361 22121456 ~ 22133365 (-)
G215171 NA non-coding downstream 243883 22025483 ~ 22082843 (-)
G215249 NA non-coding upstream 26091 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 81857 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 110756 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 113711 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 369464 22733729 ~ 22734095 (-)
LOC117598975 NA other downstream 4993 22321174 ~ 22321733 (-)
LOC117598862 NA other downstream 6451 22319544 ~ 22320275 (-)
LOC113546926 NA other downstream 12855 22312787 ~ 22313871 (-)
LOC117598921 NA other downstream 49257 22277026 ~ 22277469 (-)
LOC117598813 NA other downstream 50831 22275061 ~ 22275895 (-)
LOC117598969 NA other upstream 35420 22399685 ~ 22419910 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other upstream 292277 22656542 ~ 22704483 (-)
cltb cltb,LOC107750349,LOC107677378 other upstream 405372 22769637 ~ 22779068 (-)
G215624 LOC108277208 other upstream 770654 23134919 ~ 23156666 (-)
fam193b fam193b,LOC107579325 other upstream 948621 23312886 ~ 23327942 (-)

Expression


Co-expression Network