Gene
RNA
| Item | Value |
|---|---|
| gene id | G215249 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 22390356 ~ 22397751 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU255027 | True | 663 | lncRNA | 0.41 | 2 | 22390356 | 22397751 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598896 | NA | coding | downstream | 696722 | 21693183 ~ 21693634 (-) |
| LOC117598776 | NA | coding | downstream | 698780 | 21685697 ~ 21691576 (-) |
| LOC117598954 | NA | coding | downstream | 705711 | 21684024 ~ 21684645 (-) |
| LOC117598868 | NA | coding | downstream | 713549 | 21675638 ~ 21676807 (-) |
| LOC117598919 | NA | coding | downstream | 717026 | 21672822 ~ 21673330 (-) |
| topaz1 | topaz1 | coding | upstream | 154973 | 22552724 ~ 22582102 (-) |
| trak1b | LOC108275079,LOC108414239,LOC107706145 | coding | upstream | 232130 | 22629881 ~ 22644263 (-) |
| LOC113546927 | ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 | coding | upstream | 263809 | 22661560 ~ 22676748 (-) |
| LOC113546904 | LOC108258503 | coding | upstream | 280413 | 22678164 ~ 22696823 (-) |
| cdhr2 | NA | coding | upstream | 308803 | 22706554 ~ 22729853 (-) |
| G215228 | NA | non-coding | downstream | 192944 | 22164570 ~ 22197412 (-) |
| G215172 | NA | non-coding | downstream | 250216 | 22125672 ~ 22140140 (-) |
| G215221 | NA | non-coding | downstream | 254349 | 22080162 ~ 22136007 (-) |
| G215224 | NA | non-coding | downstream | 256991 | 22121456 ~ 22133365 (-) |
| G215171 | NA | non-coding | downstream | 307513 | 22025483 ~ 22082843 (-) |
| G215262 | NA | non-coding | upstream | 48371 | 22446122 ~ 22543980 (-) |
| G215269 | NA | non-coding | upstream | 77270 | 22475021 ~ 22507863 (-) |
| LOC117598972 | NA | non-coding | upstream | 80225 | 22477976 ~ 22480922 (-) |
| G215507 | NA | non-coding | upstream | 335978 | 22733729 ~ 22734095 (-) |
| G215509 | NA | non-coding | upstream | 339525 | 22737276 ~ 22737479 (-) |
| LOC117598814 | NA | other | downstream | 26091 | 22326726 ~ 22364265 (-) |
| LOC117598975 | NA | other | downstream | 68623 | 22321174 ~ 22321733 (-) |
| LOC117598862 | NA | other | downstream | 70081 | 22319544 ~ 22320275 (-) |
| LOC113546926 | NA | other | downstream | 76485 | 22312787 ~ 22313871 (-) |
| G215182 | LOC108275153 | other | downstream | 104653 | 21696660 ~ 22285703 (-) |
| LOC117598969 | NA | other | upstream | 1934 | 22399685 ~ 22419910 (-) |
| smim13 | smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 | other | upstream | 258791 | 22656542 ~ 22704483 (-) |
| cltb | cltb,LOC107750349,LOC107677378 | other | upstream | 371886 | 22769637 ~ 22779068 (-) |
| G215624 | LOC108277208 | other | upstream | 737168 | 23134919 ~ 23156666 (-) |
| fam193b | fam193b,LOC107579325 | other | upstream | 915135 | 23312886 ~ 23327942 (-) |
