G215262


Basic Information

Item Value
gene id G215262
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22446122 ~ 22543980 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255043
CAAAAAGTTTTCCTGTAGAACTGGACTTCCACTTTATGAAACGGCTTTGCTGAATCTGACAGGTGAAACGTTTGTCTTTGGTTTGATGTGTTTTGGGAACAGTGACACGTACAATCAGTGTGTCCAGGCCTTTGGGCAGATCCACGTACTGAACGTCAGGGAACATGGCTTCATTGGCCTGGAAGGTGACAGAGAGCTCACCAGAGGGCAGATCTCTTCCGACACACTCCAGCACTGCACTGTGTCCCTTCGGTATGTCTGCAAGAATCCTCCTGATTTCCACTGTAGGAGTTTTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106594509

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255043 True 296 lncRNA 0.48 2 22446122 22543980

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 752488 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 754546 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 761477 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 769315 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 772792 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 8744 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 85901 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 117580 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 134184 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 162574 22706554 ~ 22729853 (-)
G215249 NA non-coding downstream 48371 22390356 ~ 22397751 (-)
G215228 NA non-coding downstream 248710 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 305982 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 310115 22080162 ~ 22136007 (-)
G215224 NA non-coding downstream 312757 22121456 ~ 22133365 (-)
G215507 NA non-coding upstream 189749 22733729 ~ 22734095 (-)
G215509 NA non-coding upstream 193296 22737276 ~ 22737479 (-)
G215494 NA non-coding upstream 210580 22754560 ~ 22755107 (-)
G215489 NA non-coding upstream 237343 22781323 ~ 22815252 (-)
G215493 NA non-coding upstream 244236 22788216 ~ 22797514 (-)
LOC117598969 NA other downstream 26212 22399685 ~ 22419910 (-)
LOC117598814 NA other downstream 81857 22326726 ~ 22364265 (-)
LOC117598975 NA other downstream 124389 22321174 ~ 22321733 (-)
LOC117598862 NA other downstream 125847 22319544 ~ 22320275 (-)
LOC113546926 NA other downstream 132251 22312787 ~ 22313871 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other upstream 112562 22656542 ~ 22704483 (-)
cltb cltb,LOC107750349,LOC107677378 other upstream 225657 22769637 ~ 22779068 (-)
G215624 LOC108277208 other upstream 590939 23134919 ~ 23156666 (-)
fam193b fam193b,LOC107579325 other upstream 768906 23312886 ~ 23327942 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other upstream 812173 23356153 ~ 23389259 (-)

Expression


Co-expression Network