psmc3ip (psmc3ip)


Basic Information

Item Value
gene id psmc3ip
gene name psmc3ip
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4712873 ~ 4721468 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916473.2
GGATCTGACGTCACGGGCGCGTCACTACACCAAGTCCCATGATGAAACGCGGCGCGCGAAACTTCAGAGGAATAAACAGAGCGAGATTTTAGGATTGTTTCATCGCTACTGAAGactaaaaatgagtaaaaaagaCTCTGGAGCTGCAGATGTCATCCTGTCTTATCTGAATGAGAAAAACAGACCGTACAGCGCTCAGGATGTGTTCAGTAACCTGCAGAAGCAACACGGACTCGGGAAAACGgcggtGGTGAAGGCCATGGAGCAGCTGGCACAAGATGGCCGGATCAGAGAGAAGGTCTACGGCAAGCAGAAGATCTACTTTGCAGATCAgTCTCAGTTCGCTGATGTAAGTGATGCGGATCTGAAGCAGATGGACTGCCGCATTTCAGAGCTGAACAGACAGGTGGAGACGGTGACGCAGAGCTGCAGGCACCTCGATACAGAGCTGAAGGAGCTGAACAGCTCACTGACCACAGCAGAGATGACGAGGCAGATTAAGGAGCTGAAGGATGAGTGTGAAGGCTACAGAGCTCGACTGCACAAAATCAAATCAGCCACCAATCATGTCACgcctgaggagagagagaagGTGTACAAGGAGAGAAGCCTCTATGTGAAGGAGTGGAAGAAACGCAAGAGACTGGCCACTGATATGATGGGAGCCATTCTTGAGGGTTACccaaaaagcaagaaagaattTCTGGAGGAGGTTGGAGTTGAAACAGATGAGGATCATAAAGTGACGATTCCTAACGTCTGACACCGGGGCTGAGAAAATCCCGAGGCGGTAACGAGCTCTGACTTTAACGGACAGAGTGGAGATACTCGTGCAtcactactattattatttatgatgtatGTGGGTGGAGAAGAA
>XR_003402913.2
GGATCTGACGTCACGGGCGCGTCACTACACCAAGTCCCATGATGAAACGCGGCGCGCGAAACTTCAGAGGAATAAACAGAGCGAGATTTTAGGATTGTTTCATCGCTACTGAAGactaaaaatgagtaaaaaagaCTCTGGAGCTGCAGATGTCATCCTGTCTTATCTGAATGAGAAAAACAGACCGTACAGCGCTCAGGATGTGTTCAGTAACCTGCAGAAGCAACACGGACTCGGGAAAACGgcggtGGTGAAGGCCATGGAGCAGCTGGCACAAGATGGCCGGATCAGAGAGAAGGTCTACGGCAAGCAGAAGATCTACTTTGCAGATCAgTCTCAGTTCGCTGATGTAAGTGATGCGGATCTGAAGCAGATGGACTGCCGCATTTCAGAGCTGAACAGACAGGTGGAGACGGTGACGCAGAGCTGCAGGCACCTCGATACAGAGCTGAAGGAGCTGAACAGCTCACTGACCACAGCAGAGATGACGAGGCAGATTAAGGAGCTGAAGGATGAGTGTGAAGGCTACAGAGCTCGACTGCACAAAATCAAATCAGCCACCAATCATGTCACgcctgaggagagagagaagGTGTACAAGGAGAGAAGCCTCTATGTGAAGGAGTGGAAGAAACGCAAGAGACTGGTAAACATCTGCagctgaaataaaagaaaaaaagaacGCCACTGATATGATGGGAGCCATTCTTGAGGGTTACccaaaaagcaagaaagaattTCTGGAGGAGGTTGGAGTTGAAACAGATGAGGATCATAAAGTGACGATTCCTAACGTCTGACACCGGGGCTGAGAAAATCCCGAGGCGGTAACGAGCTCTGACTTTAACGGACAGAGTGGAGATACTCGTGCAtcactactattattatttatgatgtatGTGGGTGGAGAAGAA

Function

symbol description
psmc3ip Predicted to act upstream of or within reciprocal meiotic recombination. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in ovarian dysgenesis 3. Orthologous to human PSMC3IP (PSMC3 interacting protein).

NR:

description
PREDICTED: homologous-pairing protein 2 homolog

GO: NA

KEGG:

id description
K06695 PSMC3IP; 26S proteasome regulatory subunit, ATPase 3, interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916473.2 False 877 mRNA 0.49 8 4712873 4721468
XR_003402913.2 True 914 misc_RNA 0.48 8 4712873 4721468

Neighbor

gene id symbol gene type direction distance location
ezh1 ezh1 coding upstream 163395 4527593 ~ 4549478 (+)
moto meioc coding upstream 486828 4215915 ~ 4226045 (+)
ccdc47 ccdc47,LOC107674171,LOC107729550,LOC107721963,LOC107658463 coding upstream 581398 4120854 ~ 4131475 (+)
kcnh6a kcnh6a,kcnh6,LOC108279946,LOC108427397 coding upstream 608119 4057751 ~ 4104754 (+)
gfap gfap,LOC107729544 coding upstream 668498 4034566 ~ 4044375 (+)
fmnl1a LOC108278868,LOC107654518,LOC107601298,LOC107721528,LOC108427416,LOC107720013 coding downstream 15573 4737041 ~ 4770496 (+)
LOC113528572 NA coding downstream 249354 4970822 ~ 4974830 (+)
wnt9b wnt9b,LOC108259511,LOC107721476,LOC108427420,LOC107601233 coding downstream 260558 4982026 ~ 4991251 (+)
map3k14a LOC108259239 coding downstream 336454 5057922 ~ 5078370 (+)
rps11 rps11,LOC107674708 coding downstream 367795 5089263 ~ 5091817 (+)
G205315 NA non-coding upstream 39844 4671760 ~ 4673029 (+)
G205306 NA non-coding upstream 149219 4563408 ~ 4563654 (+)
G205299 NA non-coding upstream 161008 4549561 ~ 4551865 (+)
G205303 NA non-coding upstream 174718 4537498 ~ 4538155 (+)
G205263 NA non-coding upstream 318615 4393925 ~ 4394258 (+)
G205436 NA non-coding downstream 173072 4894540 ~ 4997796 (+)
LOC117598842 NA non-coding downstream 202446 4923914 ~ 4925682 (+)
G205454 NA non-coding downstream 358519 5079987 ~ 5081204 (+)
G206157 NA non-coding downstream 907990 5629458 ~ 5629659 (+)
G206212 NA non-coding downstream 1013902 5735370 ~ 5735607 (+)
retreg3 fam134c other upstream 1557 4692477 ~ 4711316 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other upstream 42227 4620218 ~ 4670646 (+)
limd2 limd2,LOC107674139,LOC107658411 other upstream 726589 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other upstream 741623 3971179 ~ 3971250 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 1051709 3534289 ~ 3661164 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other downstream 282080 5003548 ~ 5014516 (+)
G206166 NA other downstream 936144 5657612 ~ 5660848 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other downstream 1168084 5889552 ~ 5898200 (+)
si:ch211-198p11.6 LOC108276725 other downstream 1409312 6130780 ~ 6134572 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other downstream 1438866 6160334 ~ 6175366 (+)

Expression


Co-expression Network