LOC117598824


Basic Information

Item Value
gene id LOC117598824
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21435653 ~ 21436927 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579357.1
TAAGGAAATGACGCAAGACGAGAGAGCGCGTTTTTGCTTTGTTGATAGCTCTCGCTTGTTTATTACTGAATCAGCGATTATGATTTGTTAGTTGATCTTGAGTTATTTCTGATCGCTCCCTTTACTCTACATGTTGTATTTGCTCGTCTCTGATTTGACTCTGGCTGTTTGCCTGATTGTGTTGTGATGTGattccctttctctcttcaaGTGTTGATGGCTGGATTTATCTCTTGACTCATAGTGTTGAGACGAGgtgtgtaaagtgtatgttCCAGAGTCATTCCTCTCTGCACTGGGGCATTGGCAGGTGCAGTCGTTGTCCCAGAGCTACATAACACTGATTACTCTCAGTAAATCTACAGACAACAGGATCCTGAACCAGCAAACctgcagaggaagaaaaaaatcagg

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019843 rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579357.1 True 414 lncRNA 0.43 3 21435653 21436927

Neighbor

gene id symbol gene type direction distance location
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding downstream 55437 21368754 ~ 21380216 (-)
arl9 arl9 coding downstream 68541 21360562 ~ 21367112 (-)
ints10 ints10,LOC105894096,LOC105894103 coding downstream 233784 21184962 ~ 21201869 (-)
klb klb coding downstream 261121 21165851 ~ 21174532 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding downstream 272592 21157480 ~ 21163061 (-)
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding upstream 149171 21586098 ~ 21613875 (-)
LOC113546932 NA coding upstream 235235 21672162 ~ 21683433 (-)
LOC117598919 NA coding upstream 235895 21672822 ~ 21673330 (-)
LOC117598868 NA coding upstream 238711 21675638 ~ 21676807 (-)
LOC117598954 NA coding upstream 247097 21684024 ~ 21684645 (-)
G214933 NA non-coding downstream 75754 21359697 ~ 21359899 (-)
G214917 NA non-coding downstream 105978 21327660 ~ 21329675 (-)
G214626 NA non-coding downstream 531816 20903098 ~ 20903837 (-)
G214526 NA non-coding downstream 594019 20841431 ~ 20841634 (-)
G214493 NA non-coding downstream 653951 20778765 ~ 20781702 (-)
G214946 NA non-coding upstream 5962 21442889 ~ 21462351 (-)
G214954 NA non-coding upstream 11546 21448473 ~ 21466863 (-)
G214955 LOC108280985,LOC108280981,LOC108280967,LOC108277599 non-coding upstream 12732 21449659 ~ 21457245 (-)
G214956 NA non-coding upstream 27446 21464373 ~ 21464803 (-)
LOC113540570 LOC108277574,LOC108280967,LOC108277545 non-coding upstream 48313 21485240 ~ 21495618 (-)
LOC113528016 thegl other downstream 76463 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 163146 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 407572 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 530382 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1222024 20205339 ~ 20213629 (-)
G215187 NA other upstream 239344 21676271 ~ 22269092 (-)
G215188 NA other upstream 248777 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 257945 21694872 ~ 21695359 (-)
G215182 LOC108275153 other upstream 259733 21696660 ~ 22285703 (-)
LOC117598964 NA other upstream 260816 21697743 ~ 21698174 (-)

Expression


Co-expression Network