LOC117598972


Basic Information

Item Value
gene id LOC117598972
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22477976 ~ 22480922 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579407.1
ACATTTAGCAGGCTTACAGTAGTTCATGTGAATTTTTCCCCCCGAGGTGAAACTGCTCGTGACTGGAGGTTTTTGTGCCTGTGCGAATCAGCGTGGTCGTAGTTATCACCACGATATACTGCTGGACAAAAACCACCGGAACAAATTCACTTCTGGCCTGCACGGAATTCAGTTTGTGCAGATGACGTGTTTGTGGAATCGTTACACCTACATCATGCTGTACTCGTGACATGAGCACTATTAGctcacagaggagagagagaacaacagaCGAAAGAAACAAGAAGCAGGTCTGATAGTGGGATAAGACAGAAGAGATGGACTGGCAGTTCTGGACTGAGAGATGCAGTGGATTTGACATGGATCTGGGTGATGAAGCAGCTTCTCTTCCAGGCATTTAAAAGTAAATCGGTGCAACATTTGCATGATAACCCACCCATCAAGACTTTTTCTGGCTGTTGTTCTGTCTCGATAGACGAAGTggagaaaattccagaaaatgaATCTTTCAGGTCCGCATACCCAACCCAGCATGCTGGAGGTTTCCCCATTGTCAACCCAAATTTGGGTCACGGGAACCCAGCTACCTGACCCAACAAGCTAAACCCAGCAAGTGAGCTGTACAAAGAAGCCAGCATTTGTAGAGCGCATGGAATGGAGAAGAATACTGTACAAGGGAATTGCCAGTGTGAACAAACATTGGCAGCATGGATGTACAGTATGGGGCAGACAGTATTGATAGACATATGAAAAGAAAGCGACTCAAATCATGAACTATCTTCTGTTGCAGTTTGTCCAAATctcatgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579407.1 True 809 lncRNA 0.45 3 22477976 22480922

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 784342 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 786400 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 793331 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 801169 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 804646 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 71802 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 148959 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 180638 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 197242 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 225632 22706554 ~ 22729853 (-)
G215249 NA non-coding downstream 80225 22390356 ~ 22397751 (-)
G215228 NA non-coding downstream 280564 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 337836 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 341969 22080162 ~ 22136007 (-)
G215507 NA non-coding upstream 252807 22733729 ~ 22734095 (-)
G215509 NA non-coding upstream 256354 22737276 ~ 22737479 (-)
G215494 NA non-coding upstream 273638 22754560 ~ 22755107 (-)
G215489 NA non-coding upstream 300401 22781323 ~ 22815252 (-)
G215493 NA non-coding upstream 307294 22788216 ~ 22797514 (-)
LOC117598969 NA other downstream 58066 22399685 ~ 22419910 (-)
LOC117598814 NA other downstream 113711 22326726 ~ 22364265 (-)
LOC117598975 NA other downstream 156243 22321174 ~ 22321733 (-)
LOC117598862 NA other downstream 157701 22319544 ~ 22320275 (-)
LOC113546926 NA other downstream 164105 22312787 ~ 22313871 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other upstream 175620 22656542 ~ 22704483 (-)
cltb cltb,LOC107750349,LOC107677378 other upstream 288715 22769637 ~ 22779068 (-)
G215624 LOC108277208 other upstream 653997 23134919 ~ 23156666 (-)
fam193b fam193b,LOC107579325 other upstream 831964 23312886 ~ 23327942 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other upstream 875231 23356153 ~ 23389259 (-)

Expression


Co-expression Network