G11485


Basic Information

Item Value
gene id G11485
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 20874381 ~ 20874599 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU13621
gggaggagagtgtgagagacacacacaaagtctGGGGCAGCATGAGACAGGCTGAGAGTGCTATGTGCTGAGTAaggagagagaagtgagagcTCCACCATCCTCCAGCCCTTCCCTGCAGGACGCTGAAAGCTAAACCCCGACTGGACTAATCTCACAGCAACCGTTTTCCACAGTTCCTGGAAACGTGACTTTGAACTTATATAGGCCTGCAGCGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13621 True 219 lncRNA 0.41 1 20874381 20874599

Neighbor

gene id symbol gene type direction distance location
hdac9b LOC108267348 coding upstream 29631 20806447 ~ 20844750 (+)
ahr1a ahr coding upstream 74986 20765680 ~ 20799395 (+)
plekha8 plekha8,LOC102796187 coding upstream 184146 20681320 ~ 20690235 (+)
chn2 chn2,LOC107745376,LOC107685541,LOC107550834,LOC107684543 coding upstream 200626 20629370 ~ 20673755 (+)
tax1bp1b tax1bp1,LOC107743155 coding upstream 342705 20507558 ~ 20531676 (+)
LOC113542411 hbb,LOC108256960 coding downstream 17930 20892529 ~ 20893369 (+)
abcb5 LOC108267330,LOC108414161,LOC108414160,LOC107596720,LOC107743201,LOC107685549 coding downstream 39051 20913650 ~ 20929635 (+)
dnah9 dnah11 coding downstream 130228 21004827 ~ 21007594 (+)
LOC113542626 dnah11,LOC108413261 coding downstream 132831 21007430 ~ 21056236 (+)
fhod3b fhod3,LOC107685591,LOC107743170 coding downstream 271734 21146333 ~ 21261824 (+)
G11439 NA non-coding upstream 64138 20732105 ~ 20810243 (+)
G11441 ankrd44,ankrd28b,ankrd28,LOC107685545,LOC107550837,LOC107684548,LOC108411106,LOC107596646 non-coding upstream 135982 20737732 ~ 20738399 (+)
G11395 NA non-coding upstream 252108 20620826 ~ 20622273 (+)
G11304 NA non-coding upstream 376782 20496304 ~ 20497599 (+)
G11303 NA non-coding upstream 378191 20495319 ~ 20496190 (+)
G11487 NA non-coding downstream 1019 20875618 ~ 20875888 (+)
G11488 NA non-coding downstream 1323 20875922 ~ 20876186 (+)
G11489 NA non-coding downstream 1639 20876238 ~ 20876454 (+)
G11493 NA non-coding downstream 4948 20879547 ~ 20880037 (+)
G11452 NA non-coding downstream 9090 20883689 ~ 20886015 (+)
G11401 NA other upstream 197608 20674220 ~ 20676773 (+)
creb5b creb5,LOC107684542 other upstream 261619 20556225 ~ 20612762 (+)
G11317 NA other upstream 323343 20548573 ~ 20551038 (+)
LOC113542572 NA other upstream 927496 19942571 ~ 19946885 (+)
LOC113542441 NA other upstream 1140679 19727844 ~ 19733702 (+)
nbeal2 nbeal2 other downstream 501588 21376187 ~ 21437329 (+)
LOC117597357 LOC108277915 other downstream 1067593 21942192 ~ 21945409 (+)
dbpb dbp,LOC106941520,LOC102779594,LOC103146430,LOC107394395,LOC108439896,LOC101475123,LOC102307141,LOC108242668 other downstream 1414024 22288623 ~ 22304181 (+)
LOC113542557 LOC108270950 other downstream 1446434 22321033 ~ 22328797 (+)
LOC113542324 LOC108276343,LOC108437450,LOC107598406,LOC107724902,LOC107672987,LOC107549469,LOC100149482,LOC102193556,LOC102782376 other downstream 1514442 22389041 ~ 22472482 (+)

Expression


Co-expression Network