dcst2 (dcst2)


Basic Information

Item Value
gene id dcst2
gene name dcst2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 19866379 ~ 19898936 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939666.2
GTTCACACAGACGCTATCTCAAAAGAAAACCACTATTATCACATATTCCAGGCTGACAGGCACCAGGAGACTTATTACTGGCCTATCTGTCTATATTGCAGCCCATAGAGAAGACCACATCCTGGACATTATGTTGGATATTGGAGATTGGACCTGAGAGGATACACTTTAGCAAGATGAAACTCAACAGCCAGGTGTTAAGGAGCTTTTGCAGTTCGGCATGGAGTCGTGCCTGGCGCAGTCTTGCAGCCTTTTTGCTTGGTCTGTTGCTTGTCTTCATTTACGGTGCAACAGCACTGTACATACAGAAACATGCGCTCTGGTACTGCATTATCACCACGGTAACCATGGCCGCCTTTACAGCGTTTGGAATGGGTCTCTCCGTTAGTGTGCGTTGCAACATCACACTCATGCTTCCCATGCTGTGCTCCAGGGAGGGTAAAAAAATCCTGctcttcctcatcatcacccTTGTGGTTCAAGGCCCCTTGAACAATACTCTGGAAAACTTTGACCGAGCAGCAGCCAGCGTATTGTGCGGTGCTGAGTTAGCCATGAACCAAACCCAGCAACTCATGCAGCGAGCTGCCACTCCTCTGCTGCCTGTGCTGGAGAAGGTAAGGGAGGTCAGCAGGAACGCCTACTCACTGGCAGGCAGAGTGCAGAACTTAATCAGAGCCCTTACAGAGTCTGTACGCCATGTCTCTCGTTCTCTGAGAAATGTGCTGCACTTCTTGGCGAGTATCGGCGATATCTGTAATGCGGAGATGGGAACACCGTATAAGAAATGTAACTCAGTGTTTGATGAGGGCCGTGCTGACTGTATGGAGCTGCTCTCAGTGTTCTCTTTCCTGTGCCACATCGTGGATGGCTTCAGGCCTCTCTGTGGCCTCACGCGCGTTGGCGAGTTCTTCTGTGTCATACCCTCATATATTGCCAACCATCTAAAGACAAACTTGGCTTTCCCAATTATTGCAGCATTCAATCAAATGAAGAAAGAGTTTGAGTTCAACATGTCGGCCTCTGTGCACTTTGAGATGAATCTAAACAGCAGTCAATCTGTGCATCATATGGCTCAGAAGATCATGGAGGAGGTGTCTCAGGACCGAGAGCGTGTCCTGGACATCATGGGTCTACTGGCCTATGTGGGCCTGTTTCTGCTGCTGTTCATGTACCTACAGGCAGTCCTGTACAAAAATCACTACCTTCATGTAGATGATTTTGACAACTTCTACATAACAGAGCAATTTGTAGAGATGGATCGTAAGTTCTCAAGACAAGGAAAACCAGCAGTCCTGCCCCTGAGTGAGAAAGAGGCTCTGACCTACATCACACCCTACTGCTTTCGGTTGACGGCTCGAGAGAGGAGGACAGTCATATCTGGCCTGGTGTCCATGCTTAAGCACATGATAATGGGCTGTGTGGTGATCGCCATAGAACTCATGGTGTTCTGGGTGTTTGACATTCTGCATTACCATGCTCAAGAGATAGTGGCTAGAGCTCCTTTGGTTGTGGACATACAAGTGAATGGCTCAGGCTATGCTTCTGACATCTTTAAGGATATTCTGGCCTCCTTTGACATTCTGCAGAAAGGGAACATTACAATCCTGAGCAAGAAATGCCTGATGAAACCTCTGGAGCCAGAATACATGATATACCTATTCATTGGCTTTCTTTATGGTCTTGCCTTTTTCCTGGTGCTTGCTGGAAGTTATGCGAAACGACTACagaggtttgtgtgtgcacgTTACCACCCTCAGCGGGAAAAAGTGAGGATTCTGCGACTCCGCAGTCATATCCTCTCTCAGCGTGGCTCGCTGGGGAAAGCGTTGCTGCAGGTGGTGGCCAGGGAAAAGGAGAACCAGGGAAATGGTGGTGTACTGCAAACTTTGGCACTGCGTCTGCCAGGTGGAGTCACCATAGCCAGATTCCTGGGATTGTGTGATAAGTCATGCCTGGCCTGTGGGAAAGTTGTGAAGGTCAAAAACAGCTCAGATTTCTACACCTGCTCTACTCAAAACTGCACAGGGTGTTTCTGCATGCAGTGCTTCAGGATAATGGGGAACATCTGTGCTGTCTGTATGGGGCCCCTGACATTCCAGGAAGACTCTGAGTATGAGCTAGACTCCAGTGATGAGGAGCAAGTGAATCTGTGGGAGGCGGCTATGACATCACCACACATCAATAAGAATGCTGACAGGATGAGGCTGATGGGGAGGTACATGTCCGTGGCAACTGAGAACCCTGTAAATACTGAGGACCGGAGTGATTCACACACCAGCAACTCTGAGCTCAGAGCCAATGAAGACCAGTGCCATACCTTAAACCTACCAAAGTTTGAAAACATAGTTTGAGACCTGTGCAAGACAGAGCCCACTCTAATCACCTTCCAGTACAAATTCAGCATCATCTATAAGAACAGCATTTTTGCCTTAACTCAATAATTGTATAAAAGTATGTTCCTCACTGCAGGGTTTGTGTTTTCTTCACAAAGCGTGAAAATGCCATTGTTTTTCAGATGTTCTTTGAGAATGTGGTCAGGCTGGTTGGGTGTTGAGTTATTGCTCTACTTTTTCATGGCCTGCGGCTTTGTGGAATTTGTGGTATGGGCTCTTGTGCACTAATAAATATCTCAGGATTTCCAAATCCATCTTAGGATCTTCGGCTTGATCTATGACATGgcagaaaaacatcacaaacaatTCCTTCTAACACACAAAACCTACCATTTCCCATGTTACCACGCCTCCTTTGCTTGAACTGTTTCACTGTtgccttgttgttgttgttgttgttgttgttttctccAAGATTTTTGGAAAGCCAAAATTATAAATTGTGACCTTAAGGCTACTATGAACAGGACAAACATAAACTCTTAAGTCAGTGTAGATAAAATAATAGTATAAATCAATGAATTTGGGTACCTACACCATATCTTTCTGCCGCGCTTAGATTTGAA

Function

symbol description
dcst2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DCST2 (DC-STAMP domain containing 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939666.2 True 2962 mRNA 0.46 18 19866379 19898936

Neighbor

gene id symbol gene type direction distance location
trim33l NA coding downstream 7057 19840125 ~ 19859322 (-)
zgc:171704 LOC108267597 coding downstream 26734 19838087 ~ 19839645 (-)
chtopb LOC108258844 coding downstream 62746 19798558 ~ 19803633 (-)
npr1b npr1b,LOC108273580,LOC103022666,LOC108436575,LOC107741766,LOC107689868,LOC107681586,LOC107717786,LOC106580330 coding downstream 78223 19747911 ~ 19788156 (-)
trnaq-cug_3 NA coding downstream 182722 19683586 ~ 19683657 (-)
LOC113542431 NA coding upstream 39771 19938707 ~ 19943756 (-)
polr3glb polr3gl,LOC107714326,LOC107666760 coding upstream 115988 20014924 ~ 20024522 (-)
LOC113542331 gatad2b,LOC108270204,LOC108436554 coding upstream 148354 20047290 ~ 20070775 (-)
iqgap3 iqgap3,LOC106605450,LOC105908924,LOC105031059 coding upstream 172205 20071141 ~ 20089725 (-)
LOC113542277 LOC108262988,LOC108436530,LOC105908886,LOC107697573,LOC107567515 coding upstream 225874 20124810 ~ 20147069 (-)
LOC113542661 NA non-coding downstream 32510 19833668 ~ 19833869 (-)
G10762 NA non-coding downstream 121861 19744306 ~ 19744518 (-)
G10757 NA non-coding downstream 125092 19730676 ~ 19741287 (-)
G10746 NA non-coding downstream 173904 19692221 ~ 19692475 (-)
G10719 NA non-coding downstream 227093 19639054 ~ 19639286 (-)
G10869 NA non-coding upstream 8163 19907099 ~ 19910920 (-)
G10956 NA non-coding upstream 115240 20014176 ~ 20014873 (-)
G11119 NA non-coding upstream 142719 20041655 ~ 20101835 (-)
G11243 NA non-coding upstream 513231 20412167 ~ 20413198 (-)
G11277 NA non-coding upstream 551393 20450329 ~ 20451325 (-)
G10832 LOC108267614 other downstream 42696 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 119496 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 120439 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 163219 19702611 ~ 19703160 (-)
trnaq-cug_8 NA other downstream 166742 19699566 ~ 19699637 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other upstream 1364641 21263577 ~ 21275341 (-)
aicda aicda other upstream 2787471 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 3002415 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 3221536 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 3233990 23132926 ~ 23165584 (-)

Expression


Co-expression Network