G86804


Basic Information

Item Value
gene id G86804
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 21938992 ~ 21941289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU103037
taatttttatttgtcagcTTACCAGTGTTTCAGTAACTCATATCAATCAGATCAACACTAGCATACAAATGAGAGCCgaaaaacatgaacacatttaatCACAATTCAGTGTATACTCAAATTGTTTGGCTCATTCCCTGTGCGATACTTGAAAAGTCTGTTAGTACAACAAACAGTTTCCATTTCAGATCTTTTCATCCATCGGCCATTCTCCTGTGTGATCAGCTCTGATCTCTTTACAGCTCCGTGTGATGCAACTTCATGGCTTTTAACATGTTCTCCTCCAAGAAATCCAAGTCTTCAGGTTCATAGGTGTACTTGCGGTTGGTGTACTTGCCAGTGATGTCGGTGCGCACGGTCAGCGTGGGATCTGGGATAAAGAAGAAACAGATAGCTCGTCATTTAGTCTGAGATATTGACTCAAGCTGAGAGGATTTGGtttctaaagaaaaataaagtatcTACAGTTTTGTGTGCATTTAATATTGATACTTAAGTGACAAATCATtaagtttaatattttcagGAGAAGCTCACCAACAAAAAGAATTCTGGGAACGTAATAGCCGTCAGGAGCCATATTGGGATCCGTCGTTTCATGCTGCAAGTAATATTCAGGCTGGGTTAGACAATCAGTGAAATGTCCTGTCATTGATGTACAAAGAGTTTATATCaatttacactcactgagcactttattaggaacatctgtacacctacACCTATTCACGCTATCATctgatcagccaatcgtgtggcagcagtacacTGTATAAGATCACACAGATACGGGCCAcaagcttcgggtaatgttcatatcaaccatcagaatggcgaaacaatgtgatctcagtgattttgagcATGGCAaagccagacaggctggtttgaatatttctatacctgctgatctcctgggattttcacacacagtctctagagtttactcagaatggtgcaataaaaaaaacatccagtgatcaGCAGTTCTGACTAGTGTTCCTAGTGTTCATAAGAGCTCAGTGCATGTATAAGTGTAACGTGAGCACTACACTGACTGTATGACAGTTATGTAAAACATTACCACTAAATTGAGCATGATGAAATCTTCTTTGGCCATTTTTTGGATGGATTTGTGCTCTGCAAAAGCCTTTTTGAGAGCTTGGTGTATGAATGAAAGAGATAAAAGTATGTTAACAACaatgtcctacacacacacacacacacactacactatatactgtacagtagtATGACTTTAAAGGTCAGAAGTCCTCATATACAGATGGGTGAAATGTAAAGGAAAAATCTGTGGCTTTGTTATGCTATGGGGACATTGTAGAAATATTTCTATCCTGTTGGGAGCGGTCTCTTCCAGGTTGATTCTGGCCCCATGTACGTGACACGAGGGTTCACAGAATGGTTTGATAAGAATGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103037 True 1438 lncRNA 0.40 2 21938992 21941289

Neighbor

gene id symbol gene type direction distance location
adarb1b adarb1,LOC108266805,LOC106581860 coding upstream 16573 21854229 ~ 21922419 (+)
zgc:66484 LOC108266459,LOC108423936 coding upstream 307185 21627915 ~ 21631807 (+)
usp37 usp37,LOC107670323,LOC107549772 coding upstream 314220 21609861 ~ 21624772 (+)
znf142 znf142 coding upstream 343898 21584793 ~ 21595094 (+)
tgfbr2l LOC108266333,LOC108423949 coding upstream 512168 21414218 ~ 21426824 (+)
traf3ip1 traf3ip1 coding downstream 3365 21944654 ~ 21970142 (+)
asb1 asb1 coding downstream 32465 21973754 ~ 21977573 (+)
LOC113526168 LOC108266782,LOC106522255 coding downstream 63141 22004430 ~ 22007437 (+)
twist2 twist2,LOC108423864,LOC103392432,LOC107091016 coding downstream 78226 22019515 ~ 22023406 (+)
LOC113526178 NA coding downstream 356369 22297658 ~ 22300338 (+)
G86737 NA non-coding upstream 135880 21763461 ~ 21803112 (+)
LOC117597370 NA non-coding upstream 142505 21764620 ~ 21796487 (+)
G86548 LOC107596087 non-coding upstream 375926 21562460 ~ 21563066 (+)
G86525 NA non-coding upstream 433630 21505161 ~ 21505362 (+)
G86495 NA non-coding upstream 481454 21456752 ~ 21457538 (+)
G86805 NA non-coding downstream 475 21941764 ~ 21943777 (+)
G86842 NA non-coding downstream 38800 21980089 ~ 21980288 (+)
G86878 NA non-coding downstream 93739 22035028 ~ 22038707 (+)
G86894 NA non-coding downstream 238777 22180066 ~ 22189110 (+)
G86926 NA non-coding downstream 313018 22254307 ~ 22291110 (+)
LOC113526135 LOC108266490 other upstream 360645 21539718 ~ 21578347 (+)
LOC113526315 NA other upstream 478908 21459921 ~ 21460084 (+)
LOC117597379 NA other upstream 1699995 20235674 ~ 20238997 (+)
bmpr2b bmpr2 other upstream 1931969 19949570 ~ 20007023 (+)
G85581 NA other upstream 2153425 19785043 ~ 19785567 (+)
G87173 NA other downstream 902361 22843650 ~ 22843993 (+)
dap1b dal1b,LOC108423913 other downstream 1177717 23119006 ~ 23122680 (+)
obsl1b obsl1,LOC108423904,LOC107657519,LOC107602158 other downstream 1489505 23430794 ~ 23471024 (+)
G87562 LOC108266540,LOC108423902 other downstream 1570047 23511336 ~ 23512606 (+)
G87809 NA other downstream 2099747 24041036 ~ 24041756 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_14342067_14344332 NA coding CI01000009 null 14341987 ~ 14344934 (-)