nms (pdcl3,nms)


Basic Information

Item Value
gene id nms
gene name pdcl3,nms
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 195031 ~ 201012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU88975
TGTGCTCATCATTACTAATCACCGACTAATCGTTACACCGGCGGGGGGGGCGGGGCTGCTGACGTCATGCCCGCCGCGCATAAATAACGCGGGCTGCGTTCGTTCCCTCGCGCACTGAAGTCAGCTCACGCGACCCGCATCTCAGCCCGAGTTCCACCGGAAGCCTTTTAACGGAGATGCGCGAGACGTGTTTCAGAGAAGTTTACTTCCTGTGTTTAATGGTCTGCTGCCTCACCGGTTTTTATTCTGATGTCGAATGTTATCCGCTGATCGACTGTGGAGAAGATGGAGACTACAGACAGggTTCAGCTGTGCAGAGCTCGCTGTGTGGACTCGTGTGGGGAGACAAGAACaagGAGCAGGTACAGAACGTCTTCAAACGGTTCTTGTTTCACTACTCGAAGGCACAGAATTCAGTCGGCACTGTCGAGAGAGAGTCGCACTCCGTCCACCCCCTGATGCGTCTCTCGCCCAAGTTTACTCTGAGGAGGAAGAAACAGCAGGTTTTGTCTGTTTGACCAGATGTTCAGTGGGAGGGTAACGCCATGTGGACTGTAAAATCACAACCgattctgtaaataaattcaatCTCACGTGTGTTGTGCGTTTGAttcctctcttgctctctcacaGCCACCATCTAATATTACCATGAAGGCATGTATAATTGTTTCAtctctttttaaacaaaaacataataaatctACTGTATGGTTAAAATAAGTGTATGGTGTAAAACAGGGATCAAACAAAAACAGCGTAAATCTACAGGTTTGTTTTTACGATGACGGCCAACAGGAACAGAAATGttacagcaaaaataatatcTATTGCTTATATAAAATGGCTTAAACGTCTAAATGTTGCGTTTGGAGTCAGTGAAGTTGTTAATCGTCACCACTAGAGGGAGCAGCTCTCTTTATTATGATGAACAGGTTAGAAAACTAATCAGCCACGTGTTCCAGTCCTGGTTTTAATGCGCACACAGTTCATTATAAAAGAGACGAGTTAGACCGAGTTGAGGACAGTTTACACGCCgctacacacacatgcctctGTGTGGGCtgaaagtgcacacacacacacacacacacacacactgacatacacacaaacgcacCATCGCACTTGAGGTTCATTCCTCCGAACACGAGCGGCCCGATGAACTGCGCCTTCATCTCTCCTTCGTGATAAACGAAGATGGTGGGCAGGTTTCTGTCCGGATAATTAGCGATGCACGTCGTGGAGATCGACTTCAGGAACTTAGTGTCTGGAAACTTCCGTGCCAACGAGGACAAGTGCTGATTGATCAGTGTGCACAAGGGGATG
>TU88976
aaaaaaaaagttgaacatTTTCTGAGcatgagaaaagagaaataaataaattttaaaataaaaaatacatgtaaaaaaaaaaaaagggggatgaaaatcaaaaacactaaaaaaaattcagaaatttaTGGAAATCTTTCTGCTGCACTTTTGTATTGAGTTCGAAAAGAAAGCAAAGTAGAAATATTGTCACTAAAAGCTGTCCGACTTTTTGGGCTCCACTGCAGGTGTGTTTTTAGGAAATAATCATTCATTTGAGATCATTATTGTAATTTAGCGTTAAAtcattatcctgatttctgCTGCTCCATCAATATCTCTAGATCATTTCCCACTCTCGGTGCCGTCTAGTTTCCTAAACCGCTTTACTCAAGAATATTGCTGTATTTTGGGATCGAAATATTTTACACCTGAAcgttaaaaaatgaattaaacatatttatttattaattattattatttccgaCAGACGAGGTTTGGCTCCTGTATTCAGGGAACAATGAATTAATGTTCGAGCGTACTGTAACTCTTACCGTTTGTGTACAATCTCATAAGATCCTCCTTCTGTATTCGTACCTGTATAAAAAATTTCATAATGACACGACTGAAATATCCCATGATGCTGTTTCTGTTGTCAGAATGTTATCCGCTGATCGACTGTGGAGAAGATGGAGACTACAGACAGGTGAGCAAAGTGTTGGCTTTAACACCTACAGCGAGTTCTTCTCTTCTTCCACTCTTTACTTCTCACGGTGGCAGTGTTTCATCCTGGAGATGATATTTTCCCCTAACAGCACTTCCTGGAGTGTGTTCGTCCTCTTCTCCCACAGCAGTCAGGCTTTtcatccatttagagttacaatTAATTTTCTGAAAaaataataataattgcacgGAATCAGTCGTCGTCAGATTCGTCGCTGTCTTTGCGGTTCGGCGCTGAGCAGCGGATGGATGAAATCAGCTGGTCCTGGATCTGTTTCCTCGGATTTTCCTCCAAATCCGTTTTCACCGCGCCGGATTCGGACAAACGCCATTCCAGCTCTGAGGAACACAACAGTATGAGGTTTCTTAATCCTGCCTGAAAGCAGGAGGGACaatcaaaccacacacacacacacacactgacatacacacaaacgcacCATCGCACTTGAGGTTCATTCCTCCGAACACGAGCGGCCCGATGAACTGCGCCTTCATCTCTCCTTCGTGATAAACGAAGATGGTGGGCAGGTTTCTGTCCGGATAATTAGCGATGCACGTCGTGGAGATCGACTTCAGGAACTTAGTGTCTGGAAACTTCCGTGCCAACGAGGACAAGTGCTGATTGATCAGTGTGCACAAGGGGATG
>XM_034304299.1
tcctgtgaatgagccgttgctatagaaacggtgatgtattaatataaataaacgaGCGTTACTGATTTGCGTTACTGGAGGATTTGAGAGAAATGTGTCATGGGTTGgagttttattaattatttataatcatttattaatgGCCTGAAAGCTGAGACCAGGTACAAATTCCTAAAACTGCCCCAATATATTTTCAGCAGTAATTGATTTATAGTTTATTGGTTCATTTcattgattaattaatgaactaATTAATTACTgagtaaattaaattacagactGACTGATGGTCCTTGTGCTCATCATTACTAATCACCGACTAATCGTTACACCGGCGGGGGGGGCGGGGCTGCTGACGTCATGCCCGCCGCGCATAAATAACGCGGGCTGCGTTCGTTCCCTCGCGCACTGAAGTCAGCTCACGCGACCCGCATCTCAGCCCGAGTTCCACCGGAAGCCTTTTAACGGAGATGCGCGAGACGTGTTTCAGAGAAGTTTACTTCCTGTGTTTAATGGTCTGCTGCCTCACCGGTTTTTATTCTGATGTCGAATGTTATCCGCTGATCGACTGTGGAGAAGATGGAGACTACAGACAGggTTCAGCTGTGCAGAGCTCGCTGTGTGGACTCGTGTGGGGAGACAAGAACaagGAGCAGGTACAGAACGTCTTCAAACGGTTCTTGTTTCACTACTCGAAGGCACAGAATTCAGTCGGCACTGTCGAGAGAGAGTCGCACTCCGTCCACCCCCTGATGCGTCTCTCGCCCAAGTTTACTCTGAGGAGGAAGAAACAGCAGGTTTTGTCTAGACACTGAAGATGACTTGCGGTCGCTCGGACAGATTCGTTCGAGGTAGGCGCTACTTCCAGCcgtaacaggttt

Function

symbol description
pdcl3 Involved in positive regulation of gene expression. Acts upstream of or within angiogenesis. Predicted to be located in cytoplasm. Orthologous to several human genes including PDCL3 (phosducin like 3).
nms Is expressed in several structures, including diencephalon; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human NMS (neuromedin S).

NR:

description
PREDICTED: neuromedin-S isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88975 False 1329 TUCP 0.47 8 195031 200718
TU88976 True 1354 TUCP 0.40 2 195031 200325
XM_034304299.1 False 881 mRNA 0.47 7 196637 201012

Neighbor

gene id symbol gene type direction distance location
LOC113524366 LOC108261406,LOC108270753 coding downstream 20672 164750 ~ 174359 (-)
LOC113524367 LOC108266218 coding downstream 38752 136834 ~ 156279 (-)
LOC117597326 LOC108266219,LOC108266898,LOC108266218,LOC108266876,LOC108258194 coding downstream 53738 138938 ~ 141293 (-)
LOC113524322 LOC108266876 coding downstream 65268 50306 ~ 129763 (-)
edar edar coding upstream 31563 232575 ~ 257446 (-)
LOC113524317 LOC108273544 coding upstream 121234 322246 ~ 354605 (-)
trappc2 trappc2 coding upstream 211561 412573 ~ 416058 (-)
gpm6bb gpm6b,LOC108414227,LOC105898107,LOC103023481,LOC100694635 coding upstream 232275 433287 ~ 458683 (-)
fancb fancb coding upstream 289468 490480 ~ 501207 (-)
LOC117597330 NA non-coding downstream 109110 83870 ~ 85921 (-)
G75037 NA non-coding downstream 131743 62798 ~ 63288 (-)
G74827 NA non-coding downstream 149162 44484 ~ 45869 (-)
G74822 NA non-coding downstream 159588 35050 ~ 35443 (-)
G74818 h2afx,LOC106534936,LOC107386469,LOC104950138,LOC106516344,LOC106527800,LOC100693699,LOC105929328,LOC107677420 non-coding downstream 168135 13659 ~ 26896 (-)
G75183 NA non-coding upstream 215725 416737 ~ 417747 (-)
G75195 NA non-coding upstream 230507 431519 ~ 434836 (-)
G75201 NA non-coding upstream 280056 481068 ~ 481964 (-)
G75240 NA non-coding upstream 360341 561353 ~ 561963 (-)
G75332 NA non-coding upstream 429432 630444 ~ 701572 (-)
G75076 NA other downstream 32454 162214 ~ 162577 (-)
G74824 LOC108263794,LOC108263798 other downstream 150685 43731 ~ 44346 (-)
G74815 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107723971 other downstream 162992 18934 ~ 32039 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other upstream 122451 323463 ~ 330490 (-)
LOC113524348 LOC108266920 other upstream 171555 372567 ~ 374644 (-)
tmsb4x NA other upstream 490068 691080 ~ 719115 (-)
frmpd4 frmpd4 other upstream 528580 729592 ~ 765991 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other upstream 657392 858404 ~ 864607 (-)

Expression


Co-expression Network