LOC117597330


Basic Information

Item Value
gene id LOC117597330
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 83870 ~ 85921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU88992
agaaaacactgaaaaagacGCTGTTTTCTTTTATGACTGCTGTTATCTGACCAAGCTAATAATTTCTACGTTACAGTGTTTACGTTTTACTGTAGTCAGTATAGAttgagttaaaaaataaaagcttgttGTTTTGTCTGAGTTTGAAGCTGTAAAACGCCGTACTGCTTTAAAACCTGAGctgttataatgagtTCAGCAGGAGCCAGACAGCGCTCCTCCAGGAAGTCTCGGGCTCCTGATCCTGCTCCCTCACAGGTAAAGCttaatgatgtgtgtaatgATCTCTCAGTTTGTGTGAGAAATCAATAACATGATAAACTTTGGCTagtgttttgtattttactgCCCTGCTTTCTTTCTGGCCAGTAAGCTATCCTGCGATTCAGGATTGAGTTATACTTCTGCGAGTGTGTATCTGCGGGTCCGTCAGTGTGTCGTGAGTGGACACTCGCATACGTGTCCGCCTTCATACCTGCACTGAACTTAAGCGTGCACACTAGGAGGCAGTGTTACATGAACAAAACCAGAATTTACAGGAAATGGAACACAAAAGGAGAAGTCTAGGAAGACAAAGAGAACAGGGGAGCGTTTATCCTCATCTGAATCAATCAGCTCATGTTTTGAAAATGCGATCCTGTTATACTCACTTGTGCTGTTAATTTCTAGCTGTCCAAGTTTCAGCTATCAGCCTGAGCATGATAGGTACACTGATATTTTTAGAAAGCGTGTCTCATCCATTTCTTTCTCAAactattatacactatatggccaaaagtatgtgggacacctgac
>XR_004578168.1
GGTAACGCGCCCAATAGCTGTTTCTCCAAACCTccagaaaacactgaaaaagacGCTGTTTTCTTTTATGACTGCTGTTATCTGACCAAGCTAATAATTTCTACGTTACAGTGTTTACGTTTTACTGTAGTCAGTATAGAttgagttaaaaaataaaagcttgttGTTTTGTCTGAGTTTGAAGCTGTAAAACGCCGTACTGCTTTAAAACCTGAGctgttataatgagtTCAGCAGGAGCCAGACAGCGCTCCTCCAGGAAGTCTCGGGCTCCTGATCCTGCTCCCTCACAGgctgtccatatggggccatcctcagcagcagtgaatgATATCCaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88992 True 795 lncRNA 0.41 2 84571 85886
XR_004578168.1 False 339 lncRNA 0.43 3 83870 85921

Neighbor

gene id symbol gene type direction distance location
LOC113524326 LOC108266219,LOC108266218,LOC108266898 coding upstream 10261 96182 ~ 106080 (-)
LOC113524368 NA coding upstream 26258 112179 ~ 125540 (-)
LOC113524367 LOC108266218 coding upstream 50913 136834 ~ 156279 (-)
LOC117597326 LOC108266219,LOC108266898,LOC108266218,LOC108266876,LOC108258194 coding upstream 53017 138938 ~ 141293 (-)
LOC113524366 LOC108261406,LOC108270753 coding upstream 78829 164750 ~ 174359 (-)
G75037 NA non-coding downstream 20582 62798 ~ 63288 (-)
G74827 NA non-coding downstream 38001 44484 ~ 45869 (-)
G74822 NA non-coding downstream 48427 35050 ~ 35443 (-)
G74818 h2afx,LOC106534936,LOC107386469,LOC104950138,LOC106516344,LOC106527800,LOC100693699,LOC105929328,LOC107677420 non-coding downstream 56974 13659 ~ 26896 (-)
G74820 LOC108261568,LOC108441237,LOC108415981,LOC108435734,LOC108412211,LOC106024139,LOC108414221,LOC108261485,LOC108261826,LOC108262582 non-coding downstream 58078 12445 ~ 25792 (-)
G75183 NA non-coding upstream 330816 416737 ~ 417747 (-)
G75195 NA non-coding upstream 345598 431519 ~ 434836 (-)
G75201 NA non-coding upstream 395147 481068 ~ 481964 (-)
G75240 NA non-coding upstream 475432 561353 ~ 561963 (-)
G75332 NA non-coding upstream 544523 630444 ~ 701572 (-)
G74824 LOC108263794,LOC108263798 other downstream 39524 43731 ~ 44346 (-)
G74815 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107723971 other downstream 51831 18934 ~ 32039 (-)
G75076 NA other upstream 76293 162214 ~ 162577 (-)
nms pdcl3,nms other upstream 109110 195031 ~ 201012 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other upstream 237542 323463 ~ 330490 (-)
LOC113524348 LOC108266920 other upstream 286646 372567 ~ 374644 (-)
tmsb4x NA other upstream 605159 691080 ~ 719115 (-)

Expression


Co-expression Network