G75076


Basic Information

Item Value
gene id G75076
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 162214 ~ 162577 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU89040
GGTAAGTTTCCTGCATCCATGCGTGACTTTTGTGGACAGCCATACTCTATCTCCGGGTTCATACTGCGGAGTGGCATTTCGACGTCTCTCTGCAAATTCTTTGTTCCTCTGAGTTGTTTGTTCAAGGTGCTGGTGTGCAACATTCCACACTTGTTCACTCCTCCTGAACCAGTCATCGACGGCAGGGGATTGGCTTTGAGAACAAGGGAGGTTGGTAACGTAGTACGCACAGGAATGGAGTTAGTTGCGTGGCTGAAAGATGTAAGGAGTTCTGGGCGTATTCTGTCCACGACAGGAACCAGGGCCAGTCCTCCTGGTTGTCAGCGCAGtatgaggtggatgggctacaacagcagaagaccac

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
TU89040 True 364 TUCP 0.51 1 162214 162577

Neighbor

gene id symbol gene type direction distance location
LOC113524367 LOC108266218 coding downstream 5935 136834 ~ 156279 (-)
LOC117597326 LOC108266219,LOC108266898,LOC108266218,LOC108266876,LOC108258194 coding downstream 20921 138938 ~ 141293 (-)
LOC113524322 LOC108266876 coding downstream 32451 50306 ~ 129763 (-)
LOC113524366 LOC108261406,LOC108270753 coding upstream 2173 164750 ~ 174359 (-)
edar edar coding upstream 69998 232575 ~ 257446 (-)
LOC113524317 LOC108273544 coding upstream 159669 322246 ~ 354605 (-)
trappc2 trappc2 coding upstream 249996 412573 ~ 416058 (-)
gpm6bb gpm6b,LOC108414227,LOC105898107,LOC103023481,LOC100694635 coding upstream 270710 433287 ~ 458683 (-)
LOC117597330 NA non-coding downstream 76293 83870 ~ 85921 (-)
G75037 NA non-coding downstream 98926 62798 ~ 63288 (-)
G74827 NA non-coding downstream 116345 44484 ~ 45869 (-)
G74822 NA non-coding downstream 126771 35050 ~ 35443 (-)
G74818 h2afx,LOC106534936,LOC107386469,LOC104950138,LOC106516344,LOC106527800,LOC100693699,LOC105929328,LOC107677420 non-coding downstream 135318 13659 ~ 26896 (-)
G75183 NA non-coding upstream 254160 416737 ~ 417747 (-)
G75195 NA non-coding upstream 268942 431519 ~ 434836 (-)
G75201 NA non-coding upstream 318491 481068 ~ 481964 (-)
G75240 NA non-coding upstream 398776 561353 ~ 561963 (-)
G75332 NA non-coding upstream 467867 630444 ~ 701572 (-)
G74824 LOC108263794,LOC108263798 other downstream 117868 43731 ~ 44346 (-)
G74815 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107723971 other downstream 130175 18934 ~ 32039 (-)
nms pdcl3,nms other upstream 32454 195031 ~ 201012 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other upstream 160886 323463 ~ 330490 (-)
LOC113524348 LOC108266920 other upstream 209990 372567 ~ 374644 (-)
tmsb4x NA other upstream 528503 691080 ~ 719115 (-)
frmpd4 frmpd4 other upstream 567015 729592 ~ 765991 (-)

Expression


Co-expression Network