G75195


Basic Information

Item Value
gene id G75195
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 431519 ~ 434836 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU89173
CATGACAATCTTTTGAATCTTATTcataacattattttataacCTGTTTTGTGGGGACCTACATAGATGTTGCTGTTAATTAGGTTCTTGCTTGTAGAGGcagaatgttttaataataattataataataataataataataataataaaaaaaaaattacatttaaaaatttctttaaatCTTTTCTGGTGCAAAATACAaggtaatttttttccccaaagttaCGAAATATTCttcaaaatatacatttatcttTCTTACAAATGTAGTTTTCAGAATGCAGTGATAAAATTCATTGTTAGTTTAcgatatatatattgatattgtatgtgggttttttttgtttttctttatgttcttcttcttatatTTAATGGACCAAGATTattcaaaaaattcaaaactcctcagtgtgaaaattggggacatttacacaaaattttacacacaaatgtCTAAAAACTCAAATATTTCAGCAGCATTAAATCCAACATTTCCTGAAGTAgtcttttttgattttttttctttttttttttttttaaatttgttgaaAAAGCAGTAAAAAGACAAAGGCAATGCTTTTAGATGAGACATTTTGTCTTTTCCGTGCTGATGATTCTTTTACAAAACATTTCTCTGACATTTGTTCTTTCATGACCTGAAATGATTGTAATTATTGTAGTTTTTTTccttgttgttattgttatatggGGATCTTTTTTCTTAATGAATCGTTATGATGAATTGATAGCAAAAGTTTTGTTTGTTAGAAGTTCGTAAAAAGAACTCGctcaatttttcatttttagaagTTAAACTagcttacaatttttttttttcttcggaAAATGCTAGATTCTGAAATTCTGTAAACTCTGTAATTGCTTGGTGGTTTTTaagacacttttttaaattttatttttgttttttttctgtacttcGTTGGACTGAAAGGGTTCAGATTTTGGCGaagtataaatattaaatccaTTTACTGTTCCTGCAGTCGGATGGTAACATACTGATACcgaaagtatttttttttttttttttaaaagtacttCATAAAACGTTTGATTTAGAAAATAATTACAGGGAGATTTGATGTTTActtactgaaaagaaaaaaaaaaaatctacaaaaaagaCGTAGTCATTTGTACTGACGCATATAGTAGGCAGTGTttgcctttttctcttttataacttcattgttcagtttttttcagatgtagaactagctttttaaaaagatcTAGAGCTTTTAGTTCATTCAGAAGTGTGTACGATGTGCTGCGTGTGGAATCGCGTTGTTAATGGATACGGAGGAGTCCGTTATGATTTCCGTTTTAATTGTAATTGGTATTCGATTTGTACCCGAGTTAGACGATGGCATCCATTGCGTGAGTTTTATCCTAAAGTTGGACGAACCTGATTTGAAGaggttttattttgaaattaattcAAGCACAACTCCGGCAAATTTCAGGGCTGATTTCAAGACTTTAATTTCTACGTGTTCATCAGACGAAGTGGAAACCCAGTAAAACTGGAGAGTTATAACTGTGACTAATGTTACCTTTTCTGTAAGTTTATTTCAGCTGTCCATCTCGCTGCAATTTATTAACCAGTCTGGTAaagggtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89173 True 1646 lncRNA 0.29 2 431519 434836

Neighbor

gene id symbol gene type direction distance location
trappc2 trappc2 coding downstream 15461 412573 ~ 416058 (-)
LOC113524317 LOC108273544 coding downstream 76914 322246 ~ 354605 (-)
edar edar coding downstream 174073 232575 ~ 257446 (-)
LOC113524366 LOC108261406,LOC108270753 coding downstream 257160 164750 ~ 174359 (-)
LOC117597326 LOC108266219,LOC108266898,LOC108266218,LOC108266876,LOC108258194 coding downstream 290226 138938 ~ 141293 (-)
fancb fancb coding upstream 55644 490480 ~ 501207 (-)
arsh LOC108266883 coding upstream 240683 675519 ~ 685478 (-)
LOC113524316 LOC108272333 coding upstream 285791 720627 ~ 724412 (-)
tlr7 tlr7,LOC108266215 coding upstream 290675 725511 ~ 729048 (-)
dct dct coding upstream 392445 827281 ~ 833892 (-)
G75183 NA non-coding downstream 13772 416737 ~ 417747 (-)
LOC117597330 NA non-coding downstream 345598 83870 ~ 85921 (-)
G75037 NA non-coding downstream 368231 62798 ~ 63288 (-)
G74827 NA non-coding downstream 385650 44484 ~ 45869 (-)
G74822 NA non-coding downstream 396076 35050 ~ 35443 (-)
G75201 NA non-coding upstream 46232 481068 ~ 481964 (-)
G75240 NA non-coding upstream 126517 561353 ~ 561963 (-)
G75332 NA non-coding upstream 195608 630444 ~ 701572 (-)
LOC117597328 NA non-coding upstream 218317 653153 ~ 660719 (-)
LOC113524353 NA non-coding upstream 226070 660906 ~ 662091 (-)
LOC113524348 LOC108266920 other downstream 56875 372567 ~ 374644 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other downstream 101029 323463 ~ 330490 (-)
nms pdcl3,nms other downstream 230507 195031 ~ 201012 (-)
G75076 NA other downstream 268942 162214 ~ 162577 (-)
G74824 LOC108263794,LOC108263798 other downstream 387173 43731 ~ 44346 (-)
tmsb4x NA other upstream 256244 691080 ~ 719115 (-)
frmpd4 frmpd4 other upstream 294756 729592 ~ 765991 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other upstream 423568 858404 ~ 864607 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other upstream 485060 919896 ~ 936968 (-)
LOC113524372 NA other upstream 503176 938012 ~ 938203 (-)

Expression


Co-expression Network