G75356


Basic Information

Item Value
gene id G75356
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 719505 ~ 720606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU89374
atatatagacacacatttcatattatacatatttcatatacaGCGTATATTTCAACCAACACCATCTTCTTATCACCGTTGCCATGATTCTGTGGACTGGATGAGGGCGAATgttcaaatgtgaaaatattgtaGTGTAATGTGCATCATGGCCagcctttattttcttttttttttcctaattaaaAGTCATATTTGTGCTCATAGATCATCATAACTCATTTCTGTAGTTACATGGCtttctcacattttttcttttagcatTCTAGCAAGTTAGATGCTATGGTGTTGCCAGATTGCTAGGGTATTGCTTTGTGGCTCCTAGAATGTTGCTATTTGGTTGCTATGATATTAAAGAGGGTTGCAAGGGTGTTGCTATACtatcccaggtggttgctagggtgttgcaaGGTGGTTGATATGCTATCCCAACTGGTTttctagggtgttgctaggtggttgctatactatcccaggtggttgctagggtgttccTAGGTGGTTGATATGGTATTCCACTGGGTTTCTAGCATGTTGCTAGTTGGCTGCTGTTATATTCAAAGTGGTTGCTAGTGTGTTGCTAGGTGATTATTGTGTTATTCTATGGGGTTGCTAGGATATTGCTAGCTgggttgctatggtattccaggtgggaGCTGTGGTGTTTCTAGGAGGTTTCTATATGATCCCAGCTGGCTGCTAGTGTGTTATTTGGTTGAGCTTCTACAGCTTGTTAGCGCAAAACGCAATACGCAAACTTCAGACAtgaaacatgtcttggctggaCTACGTTTTAGATCCGAAGTGCATCGTGTTCATTTTAGTTTTGGCTGAACTGTCAGAAGTAAAGGTACTCTACAGGTATAATTTCCTTTCCAATTTTGTACGAAAGGAGTAAATGTAGTTTTGAAGGTAAACAGCGGTTGTGTTGTTGTACTGAATGCTGGGTTCAGAGTACAGATGGGTACACAACCTTATCgcagaattacacacacacaataagatCCACGTTAAGGGGTTTTAGAAACCCAGTGTGTAGAAGGCCCagtgtttcctgtttcactgaGAGA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0002520 immune system development biological_process
GO:0002521 leukocyte differentiation biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0002376 immune system process biological_process

KEGG:

id description
ko04662 B cell receptor signaling pathway
ko04380 Osteoclast differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
TU89374 True 1070 lncRNA 0.41 2 719505 720606

Neighbor

gene id symbol gene type direction distance location
arsh LOC108266883 coding downstream 34027 675519 ~ 685478 (-)
fancb fancb coding downstream 218298 490480 ~ 501207 (-)
gpm6bb gpm6b,LOC108414227,LOC105898107,LOC103023481,LOC100694635 coding downstream 260822 433287 ~ 458683 (-)
trappc2 trappc2 coding downstream 303447 412573 ~ 416058 (-)
LOC113524317 LOC108273544 coding downstream 364900 322246 ~ 354605 (-)
LOC113524316 LOC108272333 coding upstream 21 720627 ~ 724412 (-)
tlr7 tlr7,LOC108266215 coding upstream 4905 725511 ~ 729048 (-)
dct dct coding upstream 106675 827281 ~ 833892 (-)
LOC113524324 LOC108266872,LOC108260750 coding upstream 223713 944319 ~ 957738 (-)
LOC113524329 NA coding upstream 382434 1103040 ~ 1112551 (-)
G75332 NA non-coding downstream 17933 630444 ~ 701572 (-)
LOC113524353 NA non-coding downstream 57414 660906 ~ 662091 (-)
LOC117597328 NA non-coding downstream 58786 653153 ~ 660719 (-)
G75240 NA non-coding downstream 157542 561353 ~ 561963 (-)
G75201 NA non-coding downstream 237541 481068 ~ 481964 (-)
G75365 NA non-coding upstream 39746 760352 ~ 760838 (-)
G75369 NA non-coding upstream 43689 764295 ~ 764555 (-)
G75372 NA non-coding upstream 46755 767361 ~ 772430 (-)
G75348 NA non-coding upstream 76216 796822 ~ 892057 (-)
G75429 NA non-coding upstream 207253 927859 ~ 928966 (-)
tmsb4x NA other downstream 390 691080 ~ 719115 (-)
LOC113524348 LOC108266920 other downstream 344861 372567 ~ 374644 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other downstream 389015 323463 ~ 330490 (-)
nms pdcl3,nms other downstream 518493 195031 ~ 201012 (-)
G75076 NA other downstream 556928 162214 ~ 162577 (-)
frmpd4 frmpd4 other upstream 8986 729592 ~ 765991 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other upstream 137798 858404 ~ 864607 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other upstream 199290 919896 ~ 936968 (-)
LOC113524372 NA other upstream 217406 938012 ~ 938203 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other upstream 424691 1145297 ~ 1159338 (-)

Expression


Co-expression Network