G75372


Basic Information

Item Value
gene id G75372
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 767361 ~ 772430 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU89394
AGAAGTGAcctaattagttgaatggattTGATCTGTGGGCGATTACTGTGTCACTTgatctgaaaataaatacacctgCTCCTGGAAGAACGCAGAGAGTATTAGAGAACATCACACCTAAACAACCAAGGAGCTATCAGAACAAGTCCAGGACAATGCTCTGGAAAAGGATTAATCAGGGTCTGGGTGTGGTTTTAACAAAATAtaccaaactttgaacatcctgcAACGTGACATTAACAGTAACAGAGTAAAGAGCGGAttagtcaggaaaaaaaagaaaaaaaaaaaacaagagtcCAAGGGTAACTCGCTACtctgatgctcccaccaccatgcttcacagtaaGGAGGCTGGTTTccaaacacagcacaaaatGTTTGACTCCAACATGCcttctgtaaaacacacactccaatAGTGTGTGCTATTTTGTGTACATTCATGACATTATAATCCCAGttacatccatccattcagAGAATCATCACTGCGTCACTCACTCCAGCTTGACTGTGGGTTTGGAGAAGAATTCGTTATAAAGCTGATGTTCGTCTTGACACACGTGCACCATGAAAGCACAGCCGCTGCGCacctgaacaaacacacacacacacacacacagaaacagtaCTGCAttctgtaaacactaaacagtcAGCGCTAATTATCATTAAGTGATAATGAATAAACCTGTTATGTGTAGAATTATTCAGCATGCAGTTAGCATTAAAGAAAATGAGCATGAATCAAGAGCTAATGTAAACCAAGTATTAGCGTGCATAAGGAATTAGCATGAATGCAAAACTAGCATGAAGAATTAGCATGAAATAAGAACTAGCATTAACATGAATTTATTGACATTAACATAAAGTATTAGCaggaataaagaataaagttgTGAAAAGGATGAGGCAAAGTTGTATTGTTGCTGCTCAGTGCTGGTtgttgtactgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89394 True 999 lncRNA 0.39 2 767361 772430

Neighbor

gene id symbol gene type direction distance location
tlr7 tlr7,LOC108266215 coding downstream 38313 725511 ~ 729048 (-)
LOC113524316 LOC108272333 coding downstream 42949 720627 ~ 724412 (-)
arsh LOC108266883 coding downstream 81883 675519 ~ 685478 (-)
fancb fancb coding downstream 266154 490480 ~ 501207 (-)
gpm6bb gpm6b,LOC108414227,LOC105898107,LOC103023481,LOC100694635 coding downstream 308678 433287 ~ 458683 (-)
dct dct coding upstream 54851 827281 ~ 833892 (-)
LOC113524324 LOC108266872,LOC108260750 coding upstream 171889 944319 ~ 957738 (-)
LOC113524329 NA coding upstream 330610 1103040 ~ 1112551 (-)
trnas-uga_4 NA coding upstream 457879 1230309 ~ 1230390 (-)
trnal-cag_10 NA coding upstream 458157 1230587 ~ 1230669 (-)
G75369 NA non-coding downstream 2806 764295 ~ 764555 (-)
G75365 NA non-coding downstream 6523 760352 ~ 760838 (-)
G75356 NA non-coding downstream 46755 719505 ~ 720606 (-)
G75332 NA non-coding downstream 65789 630444 ~ 701572 (-)
G75348 NA non-coding upstream 24392 796822 ~ 892057 (-)
G75429 NA non-coding upstream 155429 927859 ~ 928966 (-)
G75428 NA non-coding upstream 156717 929147 ~ 929357 (-)
G75599 NA non-coding upstream 307493 1079923 ~ 1080355 (-)
G75600 NA non-coding upstream 308777 1081207 ~ 1081406 (-)
frmpd4 frmpd4 other downstream 1370 729592 ~ 765991 (-)
tmsb4x NA other downstream 48246 691080 ~ 719115 (-)
LOC113524348 LOC108266920 other downstream 392717 372567 ~ 374644 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other downstream 436871 323463 ~ 330490 (-)
nms pdcl3,nms other downstream 566349 195031 ~ 201012 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other upstream 85974 858404 ~ 864607 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other upstream 147466 919896 ~ 936968 (-)
LOC113524372 NA other upstream 165582 938012 ~ 938203 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other upstream 372867 1145297 ~ 1159338 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other upstream 398279 1170709 ~ 1187499 (-)

Expression


Co-expression Network