LOC113524338 (LOC108266882,LOC108266876,LOC108266218,LOC108258194)


Basic Information

Item Value
gene id LOC113524338
gene name LOC108266882,LOC108266876,LOC108266218,LOC108258194
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 919896 ~ 936968 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU89458
tcgaactgattaaaacatttaacattataaaagttCTATAATTGAGACTTTATAATGACAGTGGCTGTGAGATTcaacagaacaacaaaacaagtagaactcgaaTCCAACAGCATTAACAGTGATGCCTCTGCCATCAACAAGTTTAGTTTTTACTAATTTGTTTACCTCTAAtgcccttaaaatatacttcagacAGGGAACAAGCCATTAAGGAAAAACTATTCTAGACTTTGACCGTAATGTGATCCTGACCCTGTTtgaatcaattccaaaatctaatcagttcatgtGCAGGTGAAAATGATTATTCCATACAAAAATCTAGGACAAAAGGACGGACAGACAGTCAGATGGACGGATAACCCAAGAACATAATGCCTTCACTCAAATTTATAAATGAGGGGTTAGGTAGGGGTTAGTTGTTCTGTCAGAGAAGCTCTCAGAAACCATAAAAACATGGGAGAATCTTCTAGCTCCTACATACTGCTGAAGGAGCTGCTTCAAACCTTCAAGCAGCATACAAAAGGGTCAGGGAAGAGAACTTAAGATTAAAGGCAAAAGTGGACAGCCTTCAAGAGCGGGTAGCTGCCCTTGAGGCTGACAAGGTGTTTTTGCAGAATAGTCTTTCAGCAGCACTTGCAAAGAAAGTCACTGGTTTGGATGAGGAAGcatcagaagaagaaagaaaaacaattgtGATgaggacaaagaaaaaagtggcTAAAAAGAGGGAACGTAGCTCATCTTcctcctctgtctcttcctcctcctcatcttcctcatcctcactgcaaaaaaagaagtataaaaaggggaaaggaaaagaaaagagaaagaagtacagggctggtgaaaaaaaaggcagaaaagagTTCTACTGCCAGAGCATGCACTGGACCGGTATCAGAGGGTCCTAAAGGCAGTGGCATCAGGTCTTACAAAGACTGAGGCCTATGCTAAAGTCGGCGTAGATAGGAAGACGGTTGCTGATTCAGCATGTATTGCCGAACTGGCAGAATGTGATGAGGATGCTTACAATAGACTTCGAGCATCTTTTAAACGAGGAGACAAAATGTCAGACTTCGTGGCCAGGTGTAAAGAACTCTGTAGTGAGGAGCCACtaaaaacagaaattattaaaaaaaaggaagcggGATCGCTACTGGACATTTTTGAACggaagcaaaataaaacataatcagATCTGAGTAGTTTTGAGTGTTTTAGTATTAAGTAAAAATCCAGCCTGTTTGGTTGAAGTTCATCttatttgtattgtatatgtAGCACGCTGTCAAATGTTAAATTGGAATTGTATATGTTATTTGTTCAGATTTATATTTGCTAGTCAAGTTTTCTGTCACAGTATGTAATGTTTACTGAAGAAATTCCTAGGAATGAATTAGACACGAGTAGTAACTCGTGAGCCCAGTGCTGAGTaagtattgtttatattgaaataatcCTTCATGTATTACATGTTAATTCTGTACAGTGGATTACCACTTTAGTACAGGGGGCACAAGCactattaataatgaaaagtcAGTAACACATCAGTTAAGAAACATGATTTCTACGTCTGAAATAAAGGATCCACCAAGAAATAAAGGATGGCCCAAATTAAAGGgttgttacagtggcattttAAGGGGGGAAGTGccttttgtgactttttttttacaatggaATTTTAAGGGGGAACAGCTTTAAAATTGGTTAGTGACATCTTGAAGGGAAACTGCTTTTTTGTGATTGATACAGTGGTATTTAAGGGGAATTGCTTTCCAAATGGTCAGACAacgaccccaaacatacagccaaaataactcaagaaggccttCCATGGCTGAGTCACtctcctgacttgaatcccAGGGAAAATGTATGGAAGATTTTGAAATCGCAAGTCCATCAGAAGGACCCTCATAAGCTTTGGGAACTGAAGATGATTTGCCAAAAGGAATGGAACAAAactgaacc
>XM_026910548.2
AGAACAAAAAGAGGCTGCAGGTTTCTCGCCTGAGCAGCTGAATTATTCTGCTTGAGCTAATCATCtccacattatttttttctgacagaaaTTTGCAGAGTTTTACAGTTACATTGGATCCAGTTAGAAATATAAGGGCGTTATTGTGTCTTTAAAACCCTGAGacctGCTATAATGAGTTCAGCAGGAGACAGACAGCGCTCCTCCAGAGAGTCTCGGGCTCCTGATCCTGATCCAGCTTCCTCACAGCTATCTGAGGATGTGAAAATAGAAACTTCAGGTGTAGGGACATCAGCCTCTGTGGGACACACCCCACCTGTGGACCATCAGACTGGAGCAGTCCATATGAAGCTTACACCTCAAGGCTGTGTGAAGAAAGAGGAGATGCTGGAGCTGAATGTCTGCAACAGTGGAAATGACCTGAACAACATTCCTGAAGTTTCCTCCATTAAAGAGGAAGAAACCGACGATAAAGACTACCTCTACTGTGAAGTTTGCAAATCCTTTTTCTTCAAAAAGTGTGATGTTCACGGTCCAGCACTCTTCGTCCCTGATACTCCTGTTCCCATGGGAGTCCCTGACCGAGCCAGACAAACTCTTCCTCCTGGATTAGAGATTCGGAAGTCCGGTATTCCTGACGCAGGCTTGGGAGTGTTTAATAAGGGGGAGACTGTTCCAGTTGGCGCACACTTCGGACCCTACCAGGGAGAGCTGGTAGACAGAGAGGAAGCTATGAACAGTGGCTACTCCTGGGTGataTCCAGGAGTGGACAGCGTGAAGAATACATAGATGCCAAGAGAGAGATGTATGCTAACTGGATGAGGTATGTGAATTGTGCCCATAATGATGGCGAGCAGAATCTTATGGCATTTCAGTATCAAGGAGGAATTCTGTACCGATGCTGTCGACCCATTAATCCAGGACAGGAGCTCTTGGTGTGGTATGAAGCAAATTATGCCAAAGATCTCGGCACTACGTTTGACTACCTATGGAACAAAAAGTGCTCCACAAATGGAGCTGCTTCAAACCTTCAAGCAGCATACAAAAGGGTCAGGGAAGAGAACTTAAGATTAAAGGCAAAAGTGGACAGCCTTCAAGAGCGGGTAGCTGCCCTTGAGGCTGACAAGGTGTTTTTGCAGAATAGTCTTTCAGCAGCACTTGCAAAGAAAGTCACTGGTTTGGATGAGGAAGcatcagaagaagaaagaaaaacaattgtGATgaggacaaagaaaaaagtggcTAAAAAGAGGGAACGTAGCTCATCTTcctcctctgtctcttcctcctcctcatcttcctcatcctcactgcaaaaaaagaagtataaaaaggggaaaggaaaagaaaagagaaagaagtacagggctggtgaaaaaaaaggcagaaaagagTTCTACTGCCAGAGCATGCACTGGACCGGTATCAGAGGGTCCTAAAGGCAGTGGCATCAGGTCTTACAAAGACTGAGGCCTATGCTAAAGTCGGCGTAGATAGGAAGACGGTTGCTGATTCAGCATGTATTGCCGAACTGGCAGAATGTGATGAGGATGCTTACAATAGAC
>XM_034304281.1
AGAACAAAAAGAGGCTGCAGGTTTCTCGCCTGAGCAGCTGAATTATTCTGCTTGAGCTAATCATCtccacattatttttttctgacagaaaTTTGCAGAGTTTTACAGTTACATTGGATCCAGTTAGAAATATAAGGGCGTTATTGTGTCTTTAAAACCCTGAGacctGCTATAATGAGTTCAGCAGGAGACAGACAGCGCTCCTCCAGAGAGTCTCGGGCTCCTGATCCTGATCCAGCTTCCTCACAGCTATCTGAGGATGTGAAAATAGAAACTTCAGGTGTAGGGACATCAGCCTCTGTGGGACACACCCCACCTGTGGACCATCAGACTGGAGCAGTCCATATGAAGCTTACACCTCGCTGTGTGAAGAAAGAGGAGATGCTGGAGCTGAATGTCTGCAACAGTGGAAATGACCTGAACAACATTCCTGAAGTTTCCTCCATTAAAGAGGAAGAAACCGACGATAAAGACTACCTCTACTGTGAAGTTTGCAAATCCTTTTTCTTCAAAAAGTGTGATGTTCACGGTCCAGCACTCTTCGTCCCTGATACTCCTGTTCCCATGGGAGTCCCTGACCGAGCCAGACAAACTCTTCCTCCTGGATTAGAGATTCGGAAGTCCGGTATTCCTGACGCAGGCTTGGGAGTGTTTAATAAGGGGGAGACTGTTCCAGTTGGCGCACACTTCGGACCCTACCAGGGAGAGCTGGTAGACAGAGAGGAAGCTATGAACAGTGGCTACTCCTGGGTGataTCCAGGAGTGGACAGCGTGAAGAATACATAGATGCCAAGAGAGAGATGTATGCTAACTGGATGAGGTATGTGAATTGTGCCCATAATGATGGCGAGCAGAATCTTATGGCATTTCAGTATCAAGGAGGAATTCTGTACCGATGCTGTCGACCCATTAATCCAGGACAGGAGCTCTTGGTGTGGTATGAAGCAAATTATGCCAAAGATCTCGGCACTACGTTTGACTACCTATGGAACAAAAAGTGCTCCACAAATGGAGCTGCTTCAAACCTTCAAGCAGCATACAAAAGGGTCAGGGAAGAGAACTTAAGATTAAAGGCAAAAGTGGACAGCCTTCAAGAGCGGGTAGCTGCCCTTGAGGCTGACAAGGTGTTTTTGCAGAATAGTCTTTCAGCAGCACTTGCAAAGAAAGTCACTGGTTTGGATGAGGAAGcatcagaagaagaaagaaaaacaattgtGATgaggacaaagaaaaaagtggcTAAAAAGAGGGAACGTAGCTCATCTTcctcctctgtctcttcctcctcctcatcttcctcatcctcactgcaaaaaaagaagtataaaaaggggaaaggaaaagaaaagagaaagaagtacagggctggtgaaaaaaaaggcagaaaagagTTCTACTGCCAGAGCATGCACTGGACCGGTATCAGAGGGTCCTAAAGGCAGTGGCATCAGGTCTTACAAAGACTGAGGCCTATGCTAAAGTCGGCGTAGATAGGAAGACGGTTGCTGATTCAGCATGTATTGCCGAACTGGCAGAATGTGATGAGGATGCTTACAATAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89458 True 1986 lncRNA 0.39 4 919896 926094
XM_026910548.2 False 1566 mRNA 0.46 10 920836 936968
XM_034304281.1 False 1563 mRNA 0.46 10 920836 936968

Neighbor

gene id symbol gene type direction distance location
dct dct coding downstream 86004 827281 ~ 833892 (-)
tlr7 tlr7,LOC108266215 coding downstream 190848 725511 ~ 729048 (-)
LOC113524316 LOC108272333 coding downstream 195484 720627 ~ 724412 (-)
arsh LOC108266883 coding downstream 234418 675519 ~ 685478 (-)
fancb fancb coding downstream 418689 490480 ~ 501207 (-)
LOC113524324 LOC108266872,LOC108260750 coding upstream 7351 944319 ~ 957738 (-)
LOC113524329 NA coding upstream 166072 1103040 ~ 1112551 (-)
trnas-uga_4 NA coding upstream 293341 1230309 ~ 1230390 (-)
trnal-cag_10 NA coding upstream 293619 1230587 ~ 1230669 (-)
trnaw-cca NA coding upstream 315955 1252923 ~ 1252994 (-)
G75348 NA non-coding downstream 27839 796822 ~ 892057 (-)
G75372 NA non-coding downstream 147466 767361 ~ 772430 (-)
G75369 NA non-coding downstream 155341 764295 ~ 764555 (-)
G75365 NA non-coding downstream 159058 760352 ~ 760838 (-)
G75356 NA non-coding downstream 199290 719505 ~ 720606 (-)
G75599 NA non-coding upstream 142955 1079923 ~ 1080355 (-)
G75600 NA non-coding upstream 144239 1081207 ~ 1081406 (-)
G75628 NA non-coding upstream 198658 1135626 ~ 1140203 (-)
G75640 NA non-coding upstream 232491 1169459 ~ 1169693 (-)
G75636 NA non-coding upstream 272417 1209385 ~ 1215704 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 55289 858404 ~ 864607 (-)
frmpd4 frmpd4 other downstream 153905 729592 ~ 765991 (-)
tmsb4x NA other downstream 200781 691080 ~ 719115 (-)
LOC113524348 LOC108266920 other downstream 545252 372567 ~ 374644 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other downstream 589406 323463 ~ 330490 (-)
LOC113524372 NA other upstream 1044 938012 ~ 938203 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other upstream 208329 1145297 ~ 1159338 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other upstream 233741 1170709 ~ 1187499 (-)
trnat-agu_4 NA other upstream 511223 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 534521 1471489 ~ 1471561 (-)

Expression


Co-expression Network