G75600


Basic Information

Item Value
gene id G75600
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1081207 ~ 1081406 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU89683
GGCGTCtttacagacatcttcaacCTGTCCCTTGCCCAGACAGTAGTACCAGCGTGCTTCAAGACCACCTCCATTGTGCCAGTGCCGAAACACTCCTCTCCAGCGTGCCTAAATGACTATCGCCCTGTAGCACTCACACCCATTGTGATGAAGTGTTTTGAGCGACTGGTCCTGGCTCACCTCAAGACTTGCCTGCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89683 True 200 lncRNA 0.54 1 1081207 1081406

Neighbor

gene id symbol gene type direction distance location
LOC113524324 LOC108266872,LOC108260750 coding downstream 123469 944319 ~ 957738 (-)
dct dct coding downstream 247315 827281 ~ 833892 (-)
tlr7 tlr7,LOC108266215 coding downstream 352159 725511 ~ 729048 (-)
LOC113524316 LOC108272333 coding downstream 356795 720627 ~ 724412 (-)
arsh LOC108266883 coding downstream 395729 675519 ~ 685478 (-)
LOC113524329 NA coding upstream 21634 1103040 ~ 1112551 (-)
trnas-uga_4 NA coding upstream 148903 1230309 ~ 1230390 (-)
trnal-cag_10 NA coding upstream 149181 1230587 ~ 1230669 (-)
trnaw-cca NA coding upstream 171517 1252923 ~ 1252994 (-)
trnal-caa_1 NA coding upstream 176736 1258142 ~ 1258256 (-)
G75599 NA non-coding downstream 852 1079923 ~ 1080355 (-)
G75428 NA non-coding downstream 151850 929147 ~ 929357 (-)
G75429 NA non-coding downstream 152241 927859 ~ 928966 (-)
G75348 NA non-coding downstream 189150 796822 ~ 892057 (-)
G75372 NA non-coding downstream 308777 767361 ~ 772430 (-)
G75628 NA non-coding upstream 54220 1135626 ~ 1140203 (-)
G75640 NA non-coding upstream 88053 1169459 ~ 1169693 (-)
G75636 NA non-coding upstream 127979 1209385 ~ 1215704 (-)
G75663 NA non-coding upstream 155815 1237221 ~ 1254096 (-)
G75687 NA non-coding upstream 224583 1305989 ~ 1306353 (-)
LOC113524372 NA other downstream 143004 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 144239 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 216600 858404 ~ 864607 (-)
frmpd4 frmpd4 other downstream 315216 729592 ~ 765991 (-)
tmsb4x NA other downstream 362092 691080 ~ 719115 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other upstream 63891 1145297 ~ 1159338 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other upstream 89303 1170709 ~ 1187499 (-)
trnat-agu_4 NA other upstream 366785 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 390083 1471489 ~ 1471561 (-)
G75770 NA other upstream 447664 1529070 ~ 1529513 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1953496 NA non-coding NC_048589.1 CM023243.3 14122871 ~ 14130074 (-)