rpl31 (rpl31,LOC102795706,LOC106575914,LOC107740715)


Basic Information

Item Value
gene id rpl31
gene name rpl31,LOC102795706,LOC106575914,LOC107740715
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1145297 ~ 1159338 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU89684
ACCCACAATCCTTTGCTTCTTCCTTTTCGAAGTTCGTCGAACAGAATGGCGCCGCTGAAGAAAGGAGGCGAGAAGAAGAAGGGGCGCTCCGCCATTAACGAGGTGGTGACCCGGGAGTACACCATCAACATCCACAAGCGCATCCACGGCATCTCCTTCAAGAAGCGAGCCCCTCGCGCCATTAAGGAAATCCGCAAGTTCGCCGTGAAGGAGATGGGCACGCCCGACGTTCGCATCGACACCCGCCTGAACAAGGCCGTGTGGGCGAAGGGAGTCAggAACGTCCCGTACCGCATGCGTGTGCGTTTGTCCAGGAAGCGCAACGAAGATGAAGATTCACCCAACAAGCTGTACACACTCGTCACGTACGTCCCCGTCACCACGTACAAAGGTCTCCAGACTGTCAATGTGGATGAAAACTAATGTACACCTCATGacaaattgtaataaaattctgtaaagaaattggttttgcattgttttttttttcctggagaaaaaaaaaaagttgccacctcacagcacTGGCATCTCTAATCTCTATAGCTTCGCGGGTCAGTAGGAGAGTCAACTTTgcacaataacaataaagtaATGAGTACCGAGCCAAAGAAATGAAGTTTGTGCATATCCAGCTTGGGAGGAAACTGAGGTCAGAGTCCACTatgatgtggttaagggcccaacagtagcagcttgACAGTACTGGGGCTTGAagccccaaccttctgatcattaACCTTTACTGTTCATATATCTGTGGGCAGTGCATTATAAGCGACAGCGTTTTATAACAGGGCTTTGACCCAGTCGCTCCAGAAgagcagcagttttttttaaggGAGACTTACCACTCTGTTGTTTGTCATAGAAGCATCAGTAACAGCTACCACAGGGATCCTTTTGAAGACTACCCTGAAGTACGTCTGTTACACTGAAAATAGACGGACATTAACTGCTTCCCTGCGTGTCGATGCGTCTCATTCACAGATGTAGAAGTTTTAAACTAACTAGGTCGAGCGTATGGTTTAGGACCAGCTTTATACCCTGCCTTTATGTTCAGCTTGTGCAACAAGCAGCCGGCTCGTCTGGACCTGAATGAAAATGATCTGATCTCACTTGGTTGGGCTGAAAGACTTTATCTCGGCTTGGCTGAGCAGGACTCGATCTGATCCGATCCGGCCTGGTCAACCAGGACTCACCTGTTTCATGTGAGGGAGGGGTTTCTCCACGCCTTTGTCTTTCTCCTTGCCCAGGTCCTTCAACATCTGCTTCAGCTGCTCTTCGTAGCTTTTCCCCTCTCCTGAGGAGCAATTGCAAAAACCAAACCGATATAATCCCCACCGGTTCTCTGATTTGGCTCTTTTCTTGTCGCCATACAAGCTTCAGAAACAGCTACCACAGGGCAGGGTTCAGCCGCCCTTAGGCAAACCAAACGCCAGACGTAGTCGGCAGGATTCGAACCTGCGCGGGGAGACCCCAATGGATTTCTAGTCCATCGCCTTAACCACTCGGCCACGACTACAGGCGCTGCCTgctctgtaaaactgtaaattcGCTGCAATGACCGGTCTTCTCCCATCAGCAGGCAAACAGAAACTCGAACCCGACCTGAAGCGGCCTAGACTATGCAGGAAGGCTTCAACGGATCTCTTTCAACCTCTTAACACGCGACGATGGACTTCGGTATGGGAAGTCCACCAAAGCGCAGCAAAGGCAAATGTCAGAAGTGGGATTCAACCCACGCCTCCAGGGAGACTGCGACCTGAACGCAGCGCCTTAGACCGCTCGGCCATCCTGACACACGGGCCACAAGGCCAGCCGAGTCGCAGACCATGCCCGGGTCAAGGCAGTGTAGTTGGTTCACTGTGCACCCATCTATGGGCGGTGCTGTAAAATCAAGCCAGTGCTGTGAACTGAACCACAGAATCGAATGCAATGACCAGTTTTTACCCATTCAGAATT
>XM_034304297.1
gtttgttaaaaaataaataataaatatttcaaccCGGAAGTAAACCGTTCCTAACCCCCTTTTTGTATTACCCACAATCCTTTGCTTCTTCCTTTTCGAAGTTCGTCGAACAGAATGGCGCCGCTGAAGAAAGGAGGCGAGAAGAAGAAGGGGCGCTCCGCCATTAACGAGGTGGTGACCCGGGAGTACACCATCAACATCCACAAGCGCATCCACGGCATCTCCTTCAAGAAGCGAGCCCCTCGCGCCATTAAGGAAATCCGCAAGTTCGCCGTGAAGGAGATGGGCACGCCCGACGTTCGCATCGACACCCGCCTGAACAAGGCCGTGTGGGCGAAGGGAGTCAggAACGTCCCGTACCGCATGCGTGTGCGTTTGTCCAGGAAGCGCAACGAAGATGAAGATTCACCCAACAAGCTGTACACACTCGTCACGTACGTCCCCGTCACCACGTACAAAGGTCTCCAGACTGTCAATGTGGATGAAAACTAATGTACACCTCATGacaaattgtaataaaattctgtaaagaaa
>XM_034304298.1
CACAAATCCACTTTcatctATGGCGCCGCTGAAGAAAGGAGGCGAGAAGAAGAAGGGGCGCTCCGCCATTAACGAGGTGGTGACCCGGGAGTACACCATCAACATCCACAAGCGCATCCACGGCATCTCCTTCAAGAAGCGAGCCCCTCGCGCCATTAAGGAAATCCGCAAGTTCGCCGTGAAGGAGATGGGCACGCCCGACGTTCGCATCGACACCCGCCTGAACAAGGCCGTGTGGGCGAAGGGAGTCAggAACGTCCCGTACCGCATGCGTGTGCGTTTGTCCAGGAAGCGCAACGAAGATGAAGATTCACCCAACAAGCTGTACACACTCGTCACGTACGTCCCCGTCACCACGTACAAAGGTCTCCAGACTGTCAATGTGGATGAAAACTAATGTACACCTCATGacaaattgtaataaaattctgtaaagaaa

Function

symbol description
rpl31 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL31 (ribosomal protein L31).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L31-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89684 True 1965 TUCP 0.50 7 1145297 1159269
XM_034304297.1 False 534 mRNA 0.50 5 1155119 1159338
XM_034304298.1 False 439 mRNA 0.53 5 1155119 1159197

Neighbor

gene id symbol gene type direction distance location
LOC113524329 NA coding downstream 32746 1103040 ~ 1112551 (-)
LOC113524324 LOC108266872,LOC108260750 coding downstream 187559 944319 ~ 957738 (-)
dct dct coding downstream 311405 827281 ~ 833892 (-)
tlr7 tlr7,LOC108266215 coding downstream 416249 725511 ~ 729048 (-)
LOC113524316 LOC108272333 coding downstream 420885 720627 ~ 724412 (-)
trnas-uga_4 NA coding upstream 70971 1230309 ~ 1230390 (-)
trnal-cag_10 NA coding upstream 71249 1230587 ~ 1230669 (-)
trnaw-cca NA coding upstream 93585 1252923 ~ 1252994 (-)
trnal-caa_1 NA coding upstream 98804 1258142 ~ 1258256 (-)
ints6 ints6,LOC107567782,LOC107695579,LOC107725253,LOC107685346 coding upstream 112069 1271407 ~ 1282002 (-)
G75628 NA non-coding downstream 5094 1135626 ~ 1140203 (-)
G75600 NA non-coding downstream 63891 1081207 ~ 1081406 (-)
G75599 NA non-coding downstream 64942 1079923 ~ 1080355 (-)
G75428 NA non-coding downstream 215940 929147 ~ 929357 (-)
G75429 NA non-coding downstream 216331 927859 ~ 928966 (-)
G75640 NA non-coding upstream 10121 1169459 ~ 1169693 (-)
G75636 NA non-coding upstream 50047 1209385 ~ 1215704 (-)
G75663 NA non-coding upstream 77883 1237221 ~ 1254096 (-)
G75687 NA non-coding upstream 146651 1305989 ~ 1306353 (-)
G75713 NA non-coding upstream 207044 1366382 ~ 1367066 (-)
LOC113524372 NA other downstream 207094 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 208329 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 280690 858404 ~ 864607 (-)
frmpd4 frmpd4 other downstream 379306 729592 ~ 765991 (-)
tmsb4x NA other downstream 426182 691080 ~ 719115 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other upstream 11371 1170709 ~ 1187499 (-)
trnat-agu_4 NA other upstream 288853 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 312151 1471489 ~ 1471561 (-)
G75770 NA other upstream 369732 1529070 ~ 1529513 (-)
htr2aa NA other upstream 432617 1591955 ~ 1596479 (-)

Expression


Co-expression Network