G75628


Basic Information

Item Value
gene id G75628
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1135626 ~ 1140203 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU89714
CAGCAGAACGGAACAGGCACATACCAGTATAAAATATCTACTAAATACCAGTATAAAAGGAGAGGATCCTTTTGAAGACTACCCTGAAGTACGTCTGTTACACTGAAAATAGACGGACATTAACTGCTTCCCTGCGTGTCGATGCGTCTCATTCACAGATGTAGAAGTTTTAAACTAACTAGGTCGAGCGTATGGTTTAGGACCAGCTTTATACCCTGCCTTTATGTTCAGCTTGTGCAACAAGCAGCCGGCTCGTCTGGACCTGAATGAAAATGATCTGATCTCACTTGGTTGGGCTGAAAGACTTTATCTCGGCTTGGCTGAGCAGGACTCGATCTGATCCGATCCGGTCCGATCCGGCCCGGTCAACCAGGACTCACCTGTTTCATATGAGGGAGGGGTTTCTCCATGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89714 True 413 lncRNA 0.47 2 1135626 1140203

Neighbor

gene id symbol gene type direction distance location
LOC113524329 NA coding downstream 23075 1103040 ~ 1112551 (-)
LOC113524324 LOC108266872,LOC108260750 coding downstream 177888 944319 ~ 957738 (-)
dct dct coding downstream 301734 827281 ~ 833892 (-)
tlr7 tlr7,LOC108266215 coding downstream 406578 725511 ~ 729048 (-)
LOC113524316 LOC108272333 coding downstream 411214 720627 ~ 724412 (-)
trnas-uga_4 NA coding upstream 90106 1230309 ~ 1230390 (-)
trnal-cag_10 NA coding upstream 90384 1230587 ~ 1230669 (-)
trnaw-cca NA coding upstream 112720 1252923 ~ 1252994 (-)
trnal-caa_1 NA coding upstream 117939 1258142 ~ 1258256 (-)
ints6 ints6,LOC107567782,LOC107695579,LOC107725253,LOC107685346 coding upstream 131204 1271407 ~ 1282002 (-)
G75600 NA non-coding downstream 54220 1081207 ~ 1081406 (-)
G75599 NA non-coding downstream 55271 1079923 ~ 1080355 (-)
G75428 NA non-coding downstream 206269 929147 ~ 929357 (-)
G75429 NA non-coding downstream 206660 927859 ~ 928966 (-)
G75348 NA non-coding downstream 243569 796822 ~ 892057 (-)
G75640 NA non-coding upstream 29256 1169459 ~ 1169693 (-)
G75636 NA non-coding upstream 69182 1209385 ~ 1215704 (-)
G75663 NA non-coding upstream 97018 1237221 ~ 1254096 (-)
G75687 NA non-coding upstream 165786 1305989 ~ 1306353 (-)
G75713 NA non-coding upstream 226179 1366382 ~ 1367066 (-)
LOC113524372 NA other downstream 197423 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 198658 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 271019 858404 ~ 864607 (-)
frmpd4 frmpd4 other downstream 369635 729592 ~ 765991 (-)
tmsb4x NA other downstream 416511 691080 ~ 719115 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other upstream 5094 1145297 ~ 1159338 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other upstream 30506 1170709 ~ 1187499 (-)
trnat-agu_4 NA other upstream 307988 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 331286 1471489 ~ 1471561 (-)
G75770 NA other upstream 388867 1529070 ~ 1529513 (-)

Expression


Co-expression Network