G75719


Basic Information

Item Value
gene id G75719
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1375386 ~ 1377189 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU89818
TCAccctaagagagagagagagagagagagagagagagagagagagtatacagGAACGGTGGAGGAAAGCACTCGTGTACAGAGAACATGTCCTTCAAGAGCAGATCCTCATGCTTTCGCAAACTTGCTTTTGGCCACAAAGTGGTgttcagttattaaaaaaaaaaaaaaaaagtgtgtgaagaAGTACAATGAGGCCCTGTTCTTGCCCTTAACGTCTCTCTGTCTTGCCCTTTattagcttttctttttccttcctctcGCTatacctctccctctctttgttCTCACTATAGCGTGGAACCGAAACACCACTCGaaatttcaaaaacaacaaCCGCGTCGAGCTAGTCAGCGTGAACTACGACATGAACGTGGTACACACGAAGATGATCTGAAACCATAAAACAGGTCTAACACACCAGTTAGAGTTGTTCGAGATAACAGCGCACGCCTGCTTTGCCTGGAAAAGGCCGATATATCCAGACTCGTAACCTTGATCAGGAAAGAAAAGCcagcatgcagaaaaaaaaatgcagaaatcaaCTTCTGGAAATGATCAGAGCTTGAATAAGAATGTGAGCCTTCACTGGCGAGAGGAAAGGGGTGTGTTCTTGTGATACTGTGAGACCCAAATCTGCAGGTTATGACGGTCAATATAGCGTGTGCATCCATAATTGCACTAAGATTCCCAGATGTGCACAGATGGGCTGTGAGGGGTATGTTCATGTTCACAGGTAGATAAGTTCATCAGAATTCTGAAGTCTCAAAGCAGAAAAAGATGTCCAAAAGACAGTCCAGTATCTTCTGTGTGACTTGAGAGGtggatctaaaaaaaaaaaaaaaaagccccagggttcctggttcaatcctTGAGCTCGGGTTATggacatgttctccccatgtccatatgggtttcctccaggttctctgggtTCCTCCTGCCTCCCAACAACATGCCAgttggtggattggctactctcatgcagaggaaactggagaacccagaggaaacccacacaatcatggggagaacatgcacagaaactctgcacagacagtaacacaagcTCGGGACTGAACCCAGGACTGAACCCAGGACTGAACCCAGGACTGAACCCTGGACTGtgaggcagcaacgctacccactgagCCACCGTGTCACTGTGATGTGTGGAAGCAAACCCAGTATTAAGTAGGGAGAATCAGGGATAATTAACAGATCATTTTGGAGAATTGTTATGGGACACACTTGCTAGGTTTCACTTGATCAAGGCTCCAAGAAGCTGCATAAACAGAAGCATCTTGTGTTGATGTGTGctctccatttaccttgacagaaagtcAACGTGAGTCCGGGCAAAGAGAAAAAGACTTGGCCAAAAAAGGGTCATACTGACGTAACCCAATGTTAAACTGCAGAGCTCCTATGCAAATGCGTTGTGTAAGGCTGGTTGTGTAAAGGTCGGGTAATATAATACAACAGGAGCAAACATCACTGGACACTGAAGCCTAGCTTCAGGTGTGGCCTTTCTCCCATAACTCTATGAGCTCTTTCCACTGTGAAACTTAACCAGTAAACTAGAATACAGTTTCCGGTTTATTTCCGGTGAATTCCTTGTTACTTCTGCAGCTGATTAAAAATCAGCTCTTCCGAGTGAACCTTTTACTGCTGAGCTCTAACCTCATCTGTCAACTGTCATGTGAACTCTTCCTAGTAGATAAaatcaaaaaagaaatattgtttAAGGATTCTGTTTTGAACAAGAACAGGGTTTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89818 True 1780 lncRNA 0.44 2 1375386 1377189

Neighbor

gene id symbol gene type direction distance location
rubcnl rubcnl coding downstream 36164 1320263 ~ 1339222 (-)
dhrs12 dhrs12,LOC107685263,LOC107723690,LOC106511784 coding downstream 60053 1306954 ~ 1315333 (-)
trnal-caa_2 NA coding downstream 60960 1314314 ~ 1314426 (-)
trnan-guu_16 NA coding downstream 79616 1295696 ~ 1295770 (-)
trnat-agu_2 NA coding downstream 81442 1293871 ~ 1293944 (-)
esd esd,LOC107675365,LOC107601075,LOC107709410 coding upstream 19495 1396684 ~ 1404791 (-)
trnaw-cca_4 NA coding upstream 37479 1414668 ~ 1414739 (-)
si:dkey-230p4.1 LOC108271988 coding upstream 152636 1529825 ~ 1552435 (-)
LOC113524666 LOC108271633 coding upstream 177753 1554942 ~ 1566787 (-)
trnal-caa_7 NA coding upstream 191556 1568745 ~ 1568857 (-)
G75713 NA non-coding downstream 8320 1366382 ~ 1367066 (-)
G75687 NA non-coding downstream 69033 1305989 ~ 1306353 (-)
G75663 NA non-coding downstream 121290 1237221 ~ 1254096 (-)
G75636 NA non-coding downstream 159682 1209385 ~ 1215704 (-)
G75640 NA non-coding downstream 205693 1169459 ~ 1169693 (-)
G75727 NA non-coding upstream 7669 1384858 ~ 1385522 (-)
G75732 NA non-coding upstream 15590 1392779 ~ 1395138 (-)
G75734 NA non-coding upstream 19108 1396297 ~ 1396522 (-)
G75736 NA non-coding upstream 36653 1413842 ~ 1414177 (-)
G75737 NA non-coding upstream 55833 1433022 ~ 1433227 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 187887 1170709 ~ 1187499 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other downstream 216048 1145297 ~ 1159338 (-)
LOC113524372 NA other downstream 437183 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 438418 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 510779 858404 ~ 864607 (-)
trnat-agu_4 NA other upstream 71002 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 94300 1471489 ~ 1471561 (-)
G75770 NA other upstream 151881 1529070 ~ 1529513 (-)
htr2aa NA other upstream 214766 1591955 ~ 1596479 (-)
trnat-agu_6 NA other upstream 261196 1638385 ~ 1638458 (-)

Expression


Co-expression Network