G75880


Basic Information

Item Value
gene id G75880
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1849237 ~ 1873669 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU90017
GCTCAACACAAGCTGTGGAACAGATTTGTTCCACAGTTCTTAAACAGACCAGCAAATACACAGTAATGGCAAAATGCACTCTCATCCTGTCTGAGGTAAGCTGTGTCACAGATTCCTTGGACCCTGCCATCAGCACTTCATAGTCAGAAAAACAAGCTAGGCCAAAGTATAATATAAAGACTAATTTATTAATGTCTTCTGATTTCTTTGAGAAACACAAAGGTGAAAAAAACCTggaccttacacacacacacacacacacacacacacacaaaaataagtCTTGCCTGACAAGcacactgaatcatttttactTCTGTTTTGCACACCTGTTCCagtatttaaaaagtatttaatagTGGTGACCTTATAAAATAGATGTGTTTATCTAATTATGATTTAGTTTCTGACACTGCCAAATTCAGTTGAATGCATGAATCATAATATTCAGAGTGACATTTTAATGAGAACATTTTGATCTTTTATGAATCTGTTGTTCCAACATCTACTCAGAGAACGCAAAAGAAGGCTTTGTGCAAACAAGCAGTGAAAGCATAATGAGGGCACTTGAGAGTGCCTTTGTGAGTTAAAACATACATTAATGACTAAAAACTAGGCAAAAAAatgctttcttctttcttcaagCAGTTCAtacatgtgaaagaaaaaacagcaataacaaAATATCCTGGAATTTAACTATTTAGACATTGTACtgtatttggggaaaaatggacaacaaacaaacaaacaaaaattgtaGCACCAGTACAAAAATATCATGCAATGAtctgtttggcttttttttttttttcttaatgactatgtTAAAGGTTTCCTCTGGCAGAATCCAGTGCAGGCAACTTGGTTTTCATAATTTTTCCTCAGAGGTGAACCTTGAATCATCAGTGTCCCTTTATGTTCTCACTGCAGCAATGACAGGTGCCTGCTTAACAGCG
>TU90018
cacacgcacgcacacacacacacacaccaaaaataagtCTTGCCTGACAAGcacactgaatcatttttactTCTGTTTTGCACACCTGTTCCagtatttaaaaagtatttaatagTGGTGACCTTATAAAATAGATGTGTTTATCTAATTATGATTTAGTTTCTGACACTGCCAAATTCAGTTGAATGCATGAATCATAATATTCAGAGTGACATTTTAATGAGAACATTTTGATCTTTTATGAATCTGTTGTTCCAACATCTACTCAGAGAACGCAAAAGAAGGCTTTGTGCAAACAAGCAGTGAAAGCATAATGAGGGCACTTGAGAGTGCCTTTGTGAGTTAAAACATACATTAATGACTAAAAACTAGGCAAAAAAatgctttcttctttcttcaagCAGTTCAtacatgtgaaagaaaaaacagcaataacaaAATATCCTGGAATTTAACTATTTAGACATTGTACtgtatttggggaaaaatggacaacaaacaaacaaacaaaaattgtaGCACCAGTACAAAAATATCATGCAATGAtctgtttggcttttttttttttttcttaatgactatgtTAAAGGTTTCCTCTGGCAGAATCCAGTGCAGGCAACTTGGTTTTCATAATTTTTCCTCAGAGGTGAACCTTGAATCATCAGTGTCCCTTTATGTTCTCACTGCAGCAATGACAGGTGCCTGCTTAACAGCG

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU90017 True 959 lncRNA 0.36 2 1849237 1850224
TU90018 False 715 lncRNA 0.35 3 1849237 1873669

Neighbor

gene id symbol gene type direction distance location
mlphb LOC108261129 coding downstream 102206 1723257 ~ 1747031 (-)
med4 med4,LOC107673119,LOC107709409,LOC107724027 coding downstream 225188 1615900 ~ 1624049 (-)
trnal-caa_7 NA coding downstream 280380 1568745 ~ 1568857 (-)
LOC113524666 LOC108271633 coding downstream 282450 1554942 ~ 1566787 (-)
si:dkey-230p4.1 LOC108271988 coding downstream 296802 1529825 ~ 1552435 (-)
ranbp2 LOC108261082,LOC108440489 coding upstream 76463 1950132 ~ 1986039 (-)
lims2 LOC108261084,LOC108440488,LOC105898085 coding upstream 114871 1988540 ~ 1998073 (-)
LOC113546994 LOC108261078 coding upstream 195878 2069547 ~ 2080413 (-)
LOC113540088 LOC108191725,LOC101885398,LOC107661227 coding upstream 361141 2234810 ~ 2246620 (-)
LOC113540058 LOC108266598,LOC108413855,LOC101471943,LOC107700103,LOC100693874 coding upstream 607925 2481594 ~ 2522385 (-)
G75889 col6a3,LOC108262369 non-coding downstream 30054 1801272 ~ 1819183 (-)
G75875 NA non-coding downstream 126438 1722581 ~ 1722799 (-)
G75814 NA non-coding downstream 192389 1656373 ~ 1656848 (-)
G75740 NA non-coding downstream 381338 1467662 ~ 1467899 (-)
G75739 NA non-coding downstream 393950 1454999 ~ 1455287 (-)
G75925 NA non-coding upstream 37527 1911196 ~ 1917438 (-)
G75926 NA non-coding upstream 39462 1913131 ~ 1925253 (-)
G75927 NA non-coding upstream 40348 1914017 ~ 1914729 (-)
G75947 NA non-coding upstream 72304 1945973 ~ 1946176 (-)
G76013 NA non-coding upstream 240521 2114190 ~ 2114599 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 45592 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 174664 1674484 ~ 1674573 (-)
trnat-agu_8 NA other downstream 175052 1674112 ~ 1674185 (-)
trnar-ucu_6 NA other downstream 186628 1662520 ~ 1662609 (-)
trnat-agu_7 NA other downstream 199111 1650053 ~ 1650126 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other upstream 174110 2047779 ~ 2064298 (-)
ifngr2 NA other upstream 810839 2684508 ~ 2753806 (-)
LOC113541352 c6h21orf62 other upstream 927337 2801006 ~ 2805863 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 1913287 3786956 ~ 3816059 (-)
G77283 NA other upstream 2966291 4839960 ~ 4844879 (-)

Expression


Co-expression Network