G75927


Basic Information

Item Value
gene id G75927
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1914017 ~ 1914729 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU90101
ttttttttgggcaggagctataaaagatatcagggtggagGCGGGCTCACCAAGGCACCTTactctgagccagattactagttcccaatcacttatagagatagccattctttccctttctctgactgtttaagccctctttgaactgtctgtgggtttgcagttctgtcccttacttcactctagctgttctTCTTGTTCTGGTCTTTGAGGGTTCCCAGAGAAAGGATCAATGTAGGCACTAGGTGGTAGCAGTTGAATTGCT

Function

NR:

description
PREDICTED: protein FAM172A isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90101 True 265 lncRNA 0.45 2 1914017 1914729

Neighbor

gene id symbol gene type direction distance location
cops8 cops8,LOC106581673,LOC107725246,LOC107723689,LOC107685920 coding downstream 42524 1858262 ~ 1871493 (-)
trim63b trim63b,LOC100194566,LOC100505419 coding downstream 50227 1862153 ~ 1863790 (-)
mlphb LOC108261129 coding downstream 166986 1723257 ~ 1747031 (-)
med4 med4,LOC107673119,LOC107709409,LOC107724027 coding downstream 289968 1615900 ~ 1624049 (-)
trnal-caa_7 NA coding downstream 345160 1568745 ~ 1568857 (-)
ranbp2 LOC108261082,LOC108440489 coding upstream 35403 1950132 ~ 1986039 (-)
lims2 LOC108261084,LOC108440488,LOC105898085 coding upstream 73811 1988540 ~ 1998073 (-)
LOC113546994 LOC108261078 coding upstream 154818 2069547 ~ 2080413 (-)
LOC113540088 LOC108191725,LOC101885398,LOC107661227 coding upstream 320081 2234810 ~ 2246620 (-)
LOC113540058 LOC108266598,LOC108413855,LOC101471943,LOC107700103,LOC100693874 coding upstream 566865 2481594 ~ 2522385 (-)
G75880 NA non-coding downstream 40348 1849237 ~ 1873669 (-)
G75889 col6a3,LOC108262369 non-coding downstream 94834 1801272 ~ 1819183 (-)
G75875 NA non-coding downstream 191218 1722581 ~ 1722799 (-)
G75814 NA non-coding downstream 257169 1656373 ~ 1656848 (-)
G75740 NA non-coding downstream 446118 1467662 ~ 1467899 (-)
G75947 NA non-coding upstream 31244 1945973 ~ 1946176 (-)
G76013 NA non-coding upstream 199461 2114190 ~ 2114599 (-)
G76057 NA non-coding upstream 357138 2271867 ~ 2274639 (-)
G76060 NA non-coding upstream 385992 2300721 ~ 2300940 (-)
G76093 NA non-coding upstream 534990 2449719 ~ 2450949 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 110372 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 239444 1674484 ~ 1674573 (-)
trnat-agu_8 NA other downstream 239832 1674112 ~ 1674185 (-)
trnar-ucu_6 NA other downstream 251408 1662520 ~ 1662609 (-)
trnat-agu_7 NA other downstream 263891 1650053 ~ 1650126 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other upstream 133050 2047779 ~ 2064298 (-)
ifngr2 NA other upstream 769779 2684508 ~ 2753806 (-)
LOC113541352 c6h21orf62 other upstream 886277 2801006 ~ 2805863 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 1872227 3786956 ~ 3816059 (-)
G77283 NA other upstream 2925231 4839960 ~ 4844879 (-)

Expression


Co-expression Network