G76400 (stk17b)


Basic Information

Item Value
gene id G76400
gene name stk17b
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2914400 ~ 2917047 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU90707
GGAATTTGATTATGTTTATTTGAAACCCACAGAATTTATGTTCAGTCATGGCACTTCAACATCACAAACCCGTATGTCGCTTCCACAGATCTGTTCTCGAGGCTGACGTCTCTGTGTAGCTACAATAAAAACTCTTAAATCCTGATCCTGAAATTCATCCTGCAAactgattacacacactgcctgtCCTATGCTTTTCAAAAAGCTTTTCATAAATCTATATCGATTAGCAATAACAGCATCCTTGTTAATATTCTATCCATAGATAGAAAGGTGATGTGAGCTGtatgtttgtaaaaataaactcCTCTAGCAGCTCTGCCAGCTCGTCGCAGGACGTCCCTGAGGCGTGTGGACCTGGTTGGAGAAACTCTATTGGGTTAAGGCGGGGTGCATATTGCAGGCAGGTGGTGTCCGTTTCAGATCCAACATGCACATAACAACTTTCAGATCTCAGAATAAATATGATCATGGACACGTTTTTGTTCCAGTTTTGACCACTTTTTATAACTCAGACATTGATGAGATGCATTTATAGTTTCCCAGCATACAGTGTGCTAAAACAGGAGACGTCCACTTTAAAGACAATgactctttttgtttttgagggCGAGCTGGTGACATCGCCGCCGTAGCGTGAAAGCTCaaagcaaacacaaaaacacattcctTAAACCTTCTTAAACCAACAAAGCAACATGACACAACATCTCAAACAATCCAACAATACCAACATTTCCAGTTCAAAGCTCTCACATCATGAAGAGATGAGATATTATATTCTAGTCAACAGATCACAGCCACTTACAATATTCCTTACAGCCAATACTGTATGTTAATACTGTATCAACCAAATACCAACTCCAATTAACCTCAGGCTGTGTTTGTGGACGTCTGAGAATTCTTTGCACCAACATAACTTAACTCTTTATTTCCCAACAACAATCTACCTCTCACTTATAAAATCACTTCATCTCCAACTACCAACGTGTCACAAATATCCTCCGGCATCCCACATGTTCTAGACAAACACGATCTGGAATTTAAACACTCGCTTCACTGATAttcttaataaaatgaaatatttcaagaaaaaaaaaggaaaaaacttaGACTTGATCCAGTTTTGAGGACAGAATCATTGTGCATGGTGAACAGAGACGAATGCATATATTCAAGTCAGATTATGTGGCATAATAATCTGACAAATGATCTGAATAAAGCATTTAATCTATATAGAGGCATAAAAAAACTGTATTGGCAAATTGTGAAGCAAACCCTGAGAAAAGGCACACAATGaatacactattttttttttcttccccagcAGAAAATACTAGATAATCTGGTCTGACAAGTTAAAAGCGCCTGATATAACCCAGATGAGTGCATAGATTACAAAAcctgcaaaaaaattaaacacaagcTGTCCATACAGCTGTCCATTTCCTTCCTGACTTCATTTGCTtggaattaaaaaacaaaaccacaactACTTTTTATAAGAGCTACAAAAATATCTCCGTTTTAAAATGGGCTcagattaataaaattttttataaaGATTTTCCCTCTTCCTTCCCTTCATATCTGACCAAGGCACACAGATGTCAAGAGATTAAGTACTTTATGGCAGTCCTCCAAATCTGTTACTAAGGGGAAGTGCATATTGCAAAAAAACCCAGATCTGAGTAATTCAGGGTGTGGTGTGCGAATTAAATTGAGCAACGATGCCCCAAACAGggcaaatcacacacacacacacacacacacacacacacacagcactggtGGCAGGAATAATAACATTACTATCATTAATCTTTGACATTACTAAATACAGTGAGCCCCACAATCCAATGCcctgtttatttataataagcTCCTGCTAGTTTCCCCTGCAGTCCAGCATATTGTGACTTGGAGCACCGAAGAGCAATCACAATTAATGAGAACAACAATTAGACAGAAAAACTAAACCCAACATTCCTACTATTAAAACATTGCTGGTTTAGAGGAACCATTGgccttattttcttattttcctaCTTTAAAATAACGCACCTTATTGAAACTCAGTGTCAAataaatattccaaaaaaaaaaaaaaaaaaaaaacatatataatggagcaaattaaaaacacaaacacataataaaACCACATACAAGAGAAAAAGAGCTGCTCGAATAACCGAGATGAAAGAAGAGTGATTTAGTTACAGAAACCTCATTATACATGTTATTGTGCAGCAGGAATTTGCTCTAGCATTAGCAGATCGTCTTTGGTGTGGTCCCAAATGTAATTCAGAGGATTAGGATGGAAAATCTTGCCCTAATCAAAAGGGGAATGTGATTCCAGAAGGTGTTTCAGATGCTGCTGTCCCTCGCCGCCTGTGCGTCATCCTCGAAGCGGAACCTCTTGGACTGCGGTGAATCCAGAATGTTCTCCTTGTCTTCGAGGTCCTCGGGAGGAGACGCCCACTTGGCACCGCCGCTGCGCTCTCGGGGAACACGTGGGGTTACTGGAGGAGGAGAGAGTTCGGGCCCTATGCCCTGCTGCCACAGCCATGGGTGACTCAGACAGTCAGTGGCGCTCGGCCGGTCT

Function

symbol description
stk17b Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and positive regulation of apoptotic process. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Orthologous to human STK17B (serine/threonine kinase 17b).

NR:

description
PREDICTED: serine/threonine-protein kinase 17B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90707 True 2608 lncRNA 0.40 2 2914400 2917047

Neighbor

gene id symbol gene type direction distance location
tyw5 tyw5,LOC107725219,LOC107728297 coding downstream 84579 2823816 ~ 2829821 (-)
crfb1 NA coding downstream 115398 2775840 ~ 2799002 (-)
LOC113540598 NA coding downstream 142011 2760250 ~ 2772389 (-)
LOC113541336 LOC108266841 coding downstream 154194 2745336 ~ 2760206 (-)
crfb4 LOC108266840 coding downstream 171180 2734184 ~ 2743220 (-)
c5h2orf69 c6h2orf69 coding upstream 2259 2919306 ~ 2920007 (-)
nabp1a nabp1,nabp2,LOC107718374,LOC106575791,LOC108255000 coding upstream 11774 2928821 ~ 2953801 (-)
trnas-cga NA coding upstream 22274 2939321 ~ 2939402 (-)
cavin2a sdpr coding upstream 27227 2944274 ~ 2960366 (-)
tmeff2a tmeff2,tmeff2a,LOC107670719,LOC107728299 coding upstream 51633 2968680 ~ 3060237 (-)
LOC117597440 NA non-coding downstream 17196 2893376 ~ 2897204 (-)
G76325 mink1,LOC108427066 non-coding downstream 355248 2556506 ~ 2559152 (-)
G76333 NA non-coding downstream 383408 2530654 ~ 2530992 (-)
G76093 NA non-coding downstream 463451 2449719 ~ 2450949 (-)
G76060 NA non-coding downstream 613460 2300721 ~ 2300940 (-)
G76455 NA non-coding upstream 19034 2936081 ~ 2936563 (-)
G76462 NA non-coding upstream 48219 2965266 ~ 2966533 (-)
G76570 NA non-coding upstream 675771 3592818 ~ 3595411 (-)
G76658 NA non-coding upstream 934349 3851396 ~ 3852207 (-)
G76682 NA non-coding upstream 1020747 3937794 ~ 3938000 (-)
LOC113541352 c6h21orf62 other downstream 108537 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 160594 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 850102 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 1110755 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 1239827 1674484 ~ 1674573 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 869909 3786956 ~ 3816059 (-)
G77283 NA other upstream 1922913 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 2414537 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 3321908 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 3405996 6323043 ~ 6324680 (-)

Expression


Co-expression Network